Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun10g02310 | ATGGGTTCAACTCCGACCACCGTGTCTGGTGACAACTCATTGGGTGAATCTGATACAATAGAGATAACCGGGAAGGTCATGGTGGTGGCTATAATATTTCTTTTCATGGTGGTTGTGTTTGTTCTCGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGAGGAGAACGCCGCCCCTCAACCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCTCCCGGGCAAGACCCGGTGACCTATGAGACTCATCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTGCCGGTGTTGGTGTTCCAACCTGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATCATTGAAGGGGAAAAGGCCAGAGTTTTGCCCAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCTCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCCTCTAAGACAAGTGAGGAGAATGATTTCTCAGAGAACACTGAATCATCATCAAATGAAGAGAATTCAGATGCTGTGAGTGGTTTACGGTCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGAAACCACACACAAGTTAGTTCTTTTGGAGTTTCCTTGGAAGAGGAAGAAGGGAGTTCTCAGCAGGCAACTTTTCCTCCATCATCTACATCATCTTCTTCTTCTTCAGACGGTAACAATGTTAATGGTAGATGTTATGGAATGTTGGTGATTGATATTCCAAGTGAGTGTACTTCATCCTCTTTATCCCCTTCTGGAAGTAGGTGTGTTGAAGAAGAGGTGAAATCACCGATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAGAAAGCTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTTGAACAAGCACAGAGCTAG | 945 | 0.4593 | MGSTPTTVSGDNSLGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMEENAAPQPRQRRRRRRRFVFAPGQDPVTYETHQVGLDPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARVLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENDFSENTESSSNEENSDAVSGLRSSNFPTNVLVWGNHTQVSSFGVSLEEEEGSSQQATFPPSSTSSSSSSDGNNVNGRCYGMLVIDIPSECTSSSLSPSGSRCVEEEVKSPMAATLRSFKRLLSRDRKLSPCSPSSVDVEQAQS | 314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun10g02310 | 314 | CDD | RING-H2_EL5-like | 114 | 157 | - | - | |
Viun10g02310 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 161 | IPR013083 | - | |
Viun10g02310 | 314 | SUPERFAMILY | RING/U-box | 95 | 163 | - | - | |
Viun10g02310 | 314 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 22 | 204 | - | - | |
Viun10g02310 | 314 | FunFam | RING-H2 finger protein ATL3 | 83 | 162 | - | - | |
Viun10g02310 | 314 | MobiDBLite | consensus disorder prediction | 174 | 191 | - | - | |
Viun10g02310 | 314 | MobiDBLite | consensus disorder prediction | 164 | 191 | - | - | |
Viun10g02310 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - | |
Viun10g02310 | 314 | SMART | ring_2 | 115 | 156 | IPR001841 | - | |
Viun10g02310 | 314 | MobiDBLite | consensus disorder prediction | 214 | 242 | - | - | |
Viun10g02310 | 314 | Pfam | Ring finger domain | 114 | 157 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun10g02310 | Viun-Chr10 | 37611905 | 37613446 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun10g02310 | 21 | 297 | C3H Transcription Factor Family | AT1G53820 | 43.137 | 1.44e-65 | 207 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun10g02310 | - | - | gmx:100775523 | 439.499 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun10g02310 | 10 | 37611905 | 37613446 | Viun10g02310 | 10 | 37611905 | 37613446 | ECH |