Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02310 ATGGGTTCAACTCCGACCACCGTGTCTGGTGACAACTCATTGGGTGAATCTGATACAATAGAGATAACCGGGAAGGTCATGGTGGTGGCTATAATATTTCTTTTCATGGTGGTTGTGTTTGTTCTCGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGAGGAGAACGCCGCCCCTCAACCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCTCCCGGGCAAGACCCGGTGACCTATGAGACTCATCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTGCCGGTGTTGGTGTTCCAACCTGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATCATTGAAGGGGAAAAGGCCAGAGTTTTGCCCAAATGCAATCATGGGTTTCATGTGGATTGCATTGACATGTGGTTCCATTCTCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCCTCTAAGACAAGTGAGGAGAATGATTTCTCAGAGAACACTGAATCATCATCAAATGAAGAGAATTCAGATGCTGTGAGTGGTTTACGGTCTTCAAATTTTCCCACAAATGTGTTGGTTTGGGGAAACCACACACAAGTTAGTTCTTTTGGAGTTTCCTTGGAAGAGGAAGAAGGGAGTTCTCAGCAGGCAACTTTTCCTCCATCATCTACATCATCTTCTTCTTCTTCAGACGGTAACAATGTTAATGGTAGATGTTATGGAATGTTGGTGATTGATATTCCAAGTGAGTGTACTTCATCCTCTTTATCCCCTTCTGGAAGTAGGTGTGTTGAAGAAGAGGTGAAATCACCGATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAGAAAGCTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTTGAACAAGCACAGAGCTAG 945 0.4593 MGSTPTTVSGDNSLGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMEENAAPQPRQRRRRRRRFVFAPGQDPVTYETHQVGLDPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARVLPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENDFSENTESSSNEENSDAVSGLRSSNFPTNVLVWGNHTQVSSFGVSLEEEEGSSQQATFPPSSTSSSSSSDGNNVNGRCYGMLVIDIPSECTSSSLSPSGSRCVEEEVKSPMAATLRSFKRLLSRDRKLSPCSPSSVDVEQAQS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02310 314 CDD RING-H2_EL5-like 114 157 - -
Viun10g02310 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 161 IPR013083 -
Viun10g02310 314 SUPERFAMILY RING/U-box 95 163 - -
Viun10g02310 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 204 - -
Viun10g02310 314 FunFam RING-H2 finger protein ATL3 83 162 - -
Viun10g02310 314 MobiDBLite consensus disorder prediction 174 191 - -
Viun10g02310 314 MobiDBLite consensus disorder prediction 164 191 - -
Viun10g02310 314 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Viun10g02310 314 SMART ring_2 115 156 IPR001841 -
Viun10g02310 314 MobiDBLite consensus disorder prediction 214 242 - -
Viun10g02310 314 Pfam Ring finger domain 114 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02310 Viun-Chr10 37611905 37613446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02310 21 297 C3H Transcription Factor Family AT1G53820 43.137 1.44e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02310 - - gmx:100775523 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02310 10 37611905 37613446 Viun10g02310 10 37611905 37613446 ECH