Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02309 ATGAGTAGCACCATTCTCATCACTTTCCTCACAGCCATTGCTTTTGTGGCTCAACCATTCCAAAACTACATCATCCAGAGGCTGCACAGAATCTTCAAGCATTGTGGATATGCTGCTGCTGCAGTGAAGGAAAATGAAGATCATGAAAGTGATTTTTGTTCAGTGTGTCTGAGCCAGATTTGTAAAGGGGAAAAAATTAGGTCTCTTCCAGTGTGCAATCACAGGTACCATGCTGATTGTATTGGTGCTTGGCTCAAGAACCACACCACATGCCCTCTTTGCAGGAACAAAATCACTGATCATAGCCCCCAAAAGCATAAACAGGTGAAAAGCTTAGGAGAATCTCTGTTTCATCTCATACAGAGTTTCACAGATCTGTTGGTAGCTATTCTCTATATGGTGCTTCCATCAAGCATCACTCAGAGTTTCCCTCTGGTTCATTGA 444 0.4279 MSSTILITFLTAIAFVAQPFQNYIIQRLHRIFKHCGYAAAAVKENEDHESDFCSVCLSQICKGEKIRSLPVCNHRYHADCIGAWLKNHTTCPLCRNKITDHSPQKHKQVKSLGESLFHLIQSFTDLLVAILYMVLPSSITQSFPLVH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02309 147 Pfam Ring finger domain 53 95 IPR001841 -
Viun10g02309 147 SUPERFAMILY RING/U-box 42 101 - -
Viun10g02309 147 SMART ring_2 53 94 IPR001841 -
Viun10g02309 147 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 100 IPR044675 -
Viun10g02309 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 113 IPR013083 -
Viun10g02309 147 CDD RING-H2_PA-TM-RING 53 95 - -
Viun10g02309 147 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02309 Viun-Chr10 37606694 37607390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02309 53 112 C3H Transcription Factor Family AT1G53820 46.667 4.68e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02309 - - gmx:100500375 243.432