Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02305 ATGTTTCAAAGTATGAACTCACCATCTCAGCTAAATTGGAATGGGGATGATCCTTGTGGACAACAGTCTTGGCAAGGCATCACTTGCTCTGGAAATCGAGTCACGGAGATTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCTGCTAGAATCCTTGTCATCGGTTACAAACCTAGACATGAGTAATAATAATCTTGGTGGCACCATACCGTACCAACTTCCTCCTAAACTGCAGTACTTAAATCTTGCCAATAATATTTTCAATGGGCCAATCCCTTATTCTCTTTCTGACAAGGCTTCGCTTATAGTCCTGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAGTGTTGATTTCCAAAAGCTTTCTTTCCTCTCTACATTGGATCTCTCATTCAATTCTTTGACAGGTGACCTGCCTCAGAGTTTGAGCTCACTTTCTAACATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTGCCTCTGGAAACTCTGAATGTGGGAAATAATCATTTTACAGGCTGGATACCAGAACAATTGAATAGCATAAACCTGCAAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACTCCTCCAGCAGTAACAAGAAATCGAAATCACAGATCTGGGGGACATACCCCATCAGATGCTGGCTCAAGTGGTGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTGGTTGTTGCGGCAATAGTAGCATTCTTTCTGGTGAAGAAAATATCTAAAAAGTCGTCCGGTGATATTGAAAAGCTTGACAATCAGCCCTTGGCTCCTCATACTTCACATCATAATGAAATGAATTCCCTGCAAGCTTCTTCTGTAACTGACTTGAATACATTTGATACACCTACGGCCCCTATAAGTCTTAAACCTCCACCTTTTGATCGTCATAAATCATTTGACGAGGATGAGTTTTCAGTAAAGCCCGCTACCGTCATTAAGCCCACTACAGTCAAGAAGACCGTCACGGCTCCTACAAATGTAAAATCTTATTCTGTAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTATTGGGGAGGGGTCTTTTGGACGTGTGTATCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGATGATTTTGTGGAACTAGTTTCAAGCATATCCCATTTGCACCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAGCACCTACTAGTCTATGAGTTTCATAAAAACGGATCACTGCATGACTTCCTCCACCTACCTGACGAGTACAGCAAACCATTGATATGGAATTCACGCGTGAAGATTGCTTTGGGAATTGCACGTGCTTTAGAGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTCAATCCTCATCTTTCCGACAGTGGATTGGCAAGCTATATTCCAAATGCAAATCAGGTATTGAACAATGATTCTGGATCTGGATATGAAGCTCCCGAAGTTGTTATGTCTGGCCAATACACTCTTAAGAGTGATGTCTTTAGTTTTGGAGTTATCATGTTGGAACTCCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGTAACTGATCAAGGAGTATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 2055 0.4302 MFQSMNSPSQLNWNGDDPCGQQSWQGITCSGNRVTEIKLPGRSLSGSLGYLLESLSSVTNLDMSNNNLGGTIPYQLPPKLQYLNLANNIFNGPIPYSLSDKASLIVLNLGHNQLQQALSVDFQKLSFLSTLDLSFNSLTGDLPQSLSSLSNISTMYLQNNQFTGTINVLANLPLETLNVGNNHFTGWIPEQLNSINLQKDGNDWSSGPAPPPPPGTPPAVTRNRNHRSGGHTPSDAGSSGDGGKKSGIGGGGIAGIVISILVVAAIVAFFLVKKISKKSSGDIEKLDNQPLAPHTSHHNEMNSLQASSVTDLNTFDTPTAPISLKPPPFDRHKSFDEDEFSVKPATVIKPTTVKKTVTAPTNVKSYSVADLQIATGSFSVDQLIGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFVELVSSISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNDSGSGYEAPEVVMSGQYTLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFVTDQGVSNRGGDNQESQDM 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02305 684 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 344 455 - -
Viun10g02305 684 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 456 664 - -
Viun10g02305 684 MobiDBLite consensus disorder prediction 198 244 - -
Viun10g02305 684 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524
Viun10g02305 684 ProSiteProfiles Protein kinase domain profile. 378 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02305 684 Pfam Protein tyrosine and serine/threonine kinase 380 650 IPR001245 GO:0004672|GO:0006468
Viun10g02305 684 SUPERFAMILY Protein kinase-like (PK-like) 357 650 IPR011009 -
Viun10g02305 684 Gene3D Ribonuclease Inhibitor 1 102 IPR032675 -
Viun10g02305 684 SUPERFAMILY L domain-like 13 196 - -
Viun10g02305 684 Gene3D Transferase(Phosphotransferase) domain 1 457 674 - -
Viun10g02305 684 PANTHER LEUCINE RICH REPEAT KINASE 2 32 658 - -
Viun10g02305 684 Pfam Leucine Rich Repeat 128 149 IPR001611 GO:0005515
Viun10g02305 684 MobiDBLite consensus disorder prediction 315 335 - -
Viun10g02305 684 CDD STKc_IRAK 384 653 - -
Viun10g02305 684 Gene3D Phosphorylase Kinase; domain 1 341 455 - -
Viun10g02305 684 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 215 - -
Viun10g02305 684 MobiDBLite consensus disorder prediction 664 684 - -
Viun10g02305 684 MobiDBLite consensus disorder prediction 221 235 - -
Viun10g02305 684 Gene3D Ribonuclease Inhibitor 103 205 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02305 Viun-Chr10 37578298 37585435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02305 1 683 Strubbelig Receptor Gene Family AT1G53730 64.993 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun10g02305 PK_Tyr_Ser-Thr 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02305 - - gmx:100780323 1100.12