Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02304 ATGGTGTTGGATCCAACGCTGGTGCTGGTAGTGTTCATCAGCACCTGCATTTTGGCCATTAATGGTGAAACAGATCCAAATGACGTTAGTGCTCTGAGGGCTATGTTTCAAAGTATGAACTCACCATCTCAGCTAAATTGGAATGGGGATGATCCTTGTGGACAACAGTCTTGGCAAGGCATCACTTGCTCTGGAAATCGAGTCACGGAGATTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCTGCTAGAATCCTTGTCATCGGTTACAAACCTAGACATGAGTAATAATAATCTTGGTGGCACCATACCGTACCAACTTCCTCCTAAACTGCAGTACTTAAATCTTGCCAATAATATTTTCAATGGGCCAATCCCTTATTCTCTTTCTGACAAGGCTTCGCTTATAGTCCTGAATCTTGGTCACAATCAGCTCCAGCAAGCACTTAGTGTTGATTTCCAAAAGCTTTCTTTCCTCTCTACATTGGATCTCTCATTCAATTCTTTGACAGGTGACCTGCCTCAGAGTTTGAGCTCACTTTCTAACATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTGCCTCTGGAAACTCTGAATGTGGGAAATAATCATTTTACAGGCTGGATACCAGAACAATTGAATAGCATAAACCTGCAAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACTCCTCCAGCAGTAACAAGAAATCGAAATCACAGATCTGGGGGACATACCCCATCAGATGCTGGCTCAAGTGGTGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTGGTTGTTGCGGCAATAGTAGCATTCTTTCTGGTGAAGAAAATATCTAAAAAGTCGTCCGGTGATATTGAAAAGCTTGACAATCAGCCCTTGGCTCCTCATACTTCACATCATAATGAAATGAATTCCCTGCAAGCTTCTTCTGTAACTGACTTGAATACATTTGATACACCTACGGCCCCTATAAGTCTTAAACCTCCACCTTTTGATCGTCATAAATCATTTGACGAGGATGAGTTTTCAGTAAAGCCCGCTACCGTCATTAAGCCCACTACAGTCAAGAAGACCGTCACGGCTCCTACAAATGTAAAATCTTATTCTGTAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTATTGGGGAGGGGTCTTTTGGACGTGTGTATCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAATGATTTGTCTGATGATTTTGTGGAACTAGTTTCAAGCATATCCCATTTGCACCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAGCACCTACTAGTCTATGAGTTTCATAAAAACGGATCACTGCATGACTTCCTCCACCTACCTGACGAGTACAGCAAACCATTGATATGGAATTCACGCGTGAAGATTGCTTTGGGAATTGCACGTGCTTTAGAGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTCAATCCTCATCTTTCCGACAGTGGATTGGCAAGCTATATTCCAAATGCAAATCAGGTATTGAACAATGATTCTGGATCTGGATATGAAGCTCCCGAAGTTGTTATGTCTGGCCAATACACTCTTAAGAGTGATGTCTTTAGTTTTGGAGTTATCATGTTGGAACTCCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGTAACTGATCAAGGAGTATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 2157 0.4325 MVLDPTLVLVVFISTCILAINGETDPNDVSALRAMFQSMNSPSQLNWNGDDPCGQQSWQGITCSGNRVTEIKLPGRSLSGSLGYLLESLSSVTNLDMSNNNLGGTIPYQLPPKLQYLNLANNIFNGPIPYSLSDKASLIVLNLGHNQLQQALSVDFQKLSFLSTLDLSFNSLTGDLPQSLSSLSNISTMYLQNNQFTGTINVLANLPLETLNVGNNHFTGWIPEQLNSINLQKDGNDWSSGPAPPPPPGTPPAVTRNRNHRSGGHTPSDAGSSGDGGKKSGIGGGGIAGIVISILVVAAIVAFFLVKKISKKSSGDIEKLDNQPLAPHTSHHNEMNSLQASSVTDLNTFDTPTAPISLKPPPFDRHKSFDEDEFSVKPATVIKPTTVKKTVTAPTNVKSYSVADLQIATGSFSVDQLIGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFVELVSSISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNDSGSGYEAPEVVMSGQYTLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFVTDQGVSNRGGDNQESQDM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02304 718 MobiDBLite consensus disorder prediction 349 369 - -
Viun10g02304 718 Gene3D Phosphorylase Kinase; domain 1 375 489 - -
Viun10g02304 718 Gene3D Ribonuclease Inhibitor 27 136 IPR032675 -
Viun10g02304 718 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Viun10g02304 718 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Viun10g02304 718 Pfam Protein tyrosine and serine/threonine kinase 414 684 IPR001245 GO:0004672|GO:0006468
Viun10g02304 718 SUPERFAMILY L domain-like 27 227 - -
Viun10g02304 718 MobiDBLite consensus disorder prediction 698 718 - -
Viun10g02304 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 249 - -
Viun10g02304 718 Gene3D Transferase(Phosphotransferase) domain 1 491 708 - -
Viun10g02304 718 Gene3D Ribonuclease Inhibitor 137 240 IPR032675 -
Viun10g02304 718 MobiDBLite consensus disorder prediction 255 269 - -
Viun10g02304 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 698 - -
Viun10g02304 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 689 IPR046959 -
Viun10g02304 718 MobiDBLite consensus disorder prediction 232 278 - -
Viun10g02304 718 SUPERFAMILY Protein kinase-like (PK-like) 391 684 IPR011009 -
Viun10g02304 718 ProSiteProfiles Protein kinase domain profile. 412 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02304 718 CDD STKc_IRAK 418 687 - -
Viun10g02304 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 489 - -
Viun10g02304 718 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02304 Viun-Chr10 37577259 37585435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02304 8 717 Strubbelig Receptor Gene Family AT1G53730 63.649 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun10g02304 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02304 - - gmx:100780323 1153.27