Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02303 ATGATGAATACCAACACCACTGTCAAAAACAACAACGTTGGAGAATTTGGGGACACCACTCTCACCAAGGTTTTTGTCGGGGGCCTGGCATGGGAGACTCCCAAGGATGCCCTCAGAGACCATTTTGAAAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTCACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAAGAGGCTGAGGCTGCCAAAAAAGCTTGCGAGGACTCTGCAACTCTTGTTATCAATGGCCGTCGAGCCAACTGCAATCTCGCTTTCTTAGGTGCTCGCCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCACACCCACAAGGAGGATCGAACAGTGGAGTGGTGAAGAACAACAACGCAGCAGGGAATCACGTGCAGCCATACTATCATCCACTCAGAACGACTGCTATACCCTTCCACAGTCACCCTCTTCCTTTCTATGGGTACACTCCAACCTACATTGTGACAGACATAAACTACAATTACAACCAGAAACTGAGCTATGGCAATGGTGGGGCCTACCAGCAGTTGTCCCATGTGTACCCTAGGCAGGGGATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATTGGCCTACCAGCTCACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCCTCTATCATTCCTCATACAGGTACAGTTGGCACGGGTGAGTGCTTTAAAAGGGTTGTCTGA 786 0.4911 MMNTNTTVKNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPHPQGGSNSGVVKNNNAAGNHVQPYYHPLRTTAIPFHSHPLPFYGYTPTYIVTDINYNYNQKLSYGNGGAYQQLSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPHTGTVGTGECFKRVV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02303 261 Gene3D - 3 112 IPR012677 -
Viun10g02303 261 PANTHER BOULE-RELATED 10 226 - -
Viun10g02303 261 MobiDBLite consensus disorder prediction 104 128 - -
Viun10g02303 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Viun10g02303 261 SMART rrm1_1 23 96 IPR000504 GO:0003723
Viun10g02303 261 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
Viun10g02303 261 FunFam Putative RNA-binding protein ARP1 16 106 - -
Viun10g02303 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02303 Viun-Chr10 37566843 37568815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02303 18 164 C2H2 Transcription Factor Family AT2G19380 29.221 6.94e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02303 - - vra:106778170 491.886