Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02301 ATGACCAACCATCACTTCACACACTCCATTCCCTTAGTTTTTCTCATGTCATCACCATCTCCATCTTCATCTTCATCTTCCCTTTACATGGTTTCCAACTTCATGGTCTCTATCATACTTCCCTTATTCCTCTTCTCCTTCTTTGTTGTTCATGTTTCCTCTTGTAATCAGATTGATAAACTCTCCCTCTTGGCCTTCTCTCGGAACATATCCACCACTCCACCTTTTCCTTCTCTCGATTGGTCTGATTCTCTTGATTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTACTCTCCACCACCGTGTTTTCTCATTGCTCACTCACTTGCTGGTTCTTGATTTCAGCTACAATCATCTCTCCGGTGAATTGCCACCTTTTGTTGGTGATAACAGTGGTGCTGTTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAATGGGACACTTCCAAATTCTTTGCTCGAGAACTTAGCAGCTGCTGCAGCTGGAGGGAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCGTAGGTCATATTCCCACTTCCCTCTTTTGCATTAATGACCATAACTCCTCCTCTCTCAGATTCCTGGATTATTCCTCCAATGATTTTGATGGTGCCATTCAGCCTGGCCTTGGAGCATGTTCCAAGCTTGAGAAATTTAGAGCAGGCTTCAATTTTCTGTCAGGGCCTATCCCGAGTGATCTTTTTGATGCTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAGACTCAATGGAACAATTGGTGATGGTATTGTTGGCCTTACCAACCTCACAGTTTTGGAGCTATACTCCAATCATTTCACAGGTTTCATCCCTCGTGAAATTGGTAAACTCTCCAAGTTAGAACGGCTACTCCTTCATGTCAACAATTTGACAGGTACTATGCCCCCGTCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTCAATCTCTTGGAGGGAAATCTCTCTGCATTCAACTTCTCAGGATTCCTCAGCCTTACGACACTTGACCTTGGCAACAATTACTTTATCGGTGGTTTACCACCAACCCTTTATGCATGCAAGTCACTTTCAGCTGTGAGGTTTGCATCTAATAAGCTTGAGGGAGAGATTTCGCCCAGGATTCTTGAACTAGAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTTACTGGGGCTCTGACAATACTCAGGGGGCTCAAGAACCTTAGTACCCTTATGCTCTCCAAGAATTTTTTCAACGAAATGATACCTCAAGATGTGAACATAATAGAGCCAGGTGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACAGGTCAAATACCAGGTTGGCTTGTGAAACTTAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATCAGTGGTCCAATTCCTCCATGGTTGGGTACACTTCCTCAGCTTTTCTACATGGACTTGTCTGTTAACCTCCTTACAGGAGTATTTCCATTAGAGCTCACAGAACTCCCAGCACTGGCATCACAACAGGCAAATGATAAAGTAGAAAGGACTTATCTTGAGCTACCTGTCTTTGCAAATGCAAATAATGTTTCACTACTGCAATATAATCAGCTTTCAGCCCTACCCCCTGCAATATATCTGGGAAACAATCACCTTAATGGCACTATCCCTATTGAGATTGGAAAACTCAAAGCCCTTCATCAGCTGGACGTGAAAAATAACAGCTTCTCTGGTGATATACCAGTTCAGTTTTCAAACCTCACTAACTTAGAGAAACTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGATTCCCTTAGAAGATTACATTTCTTGTCTTTTTTCAGTGTAGCCTTCAATAATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCTCATATTCCAGCTTCGAAGGAAACTCGCAATTGTGTGGTCCAGTCATTCAGCGTTCTTGTTCTCAACAAAATACTACTACTAATACTACTGCAGCTAGTCGCAGCACAAACAAAAGAGTAATGATTGCACTTGTCATTACTGTCAGTTTTGGCTTTGGTTCCTTGATAACAGTGTTGACTCTGTGGATACTGTCCAAGAGAAGAGTTAATCCAGGTGGAGAGCTAGACAAGATTGAAATGGAATCAATTTCTGCCTACTCCAACAATGGAATTCACCCAGAAGTTGACAAGGAGGCTAGCCTAGTGGTATTGTTTTCCAACAAGAACAATGAAACTAAAGACCTTACCATATTTGACATCCTAAAAGCCACTGAGAATTTCAGTCAGGCAAACATCATAGGATGTGGAGGCTTTGGTTTGGTTTATAAAGCAACACTACCAAATGGAACCACACTTGCCATCAAGAAACTTTCAGGAGACTTAGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAGCATGAGAATCTGGTGACATTAAAAGGCTATTGTGTGCATGAGGGGTTCCGACTTCTGATGTATACATACATGGAAAACGGAAGCCTTGATTACTGGTTACATGAAAGGCCTGATGGTGCTTCTGAACTTGATTGGCCAACTCGGTTGAAGATTGCACAAGGTGCAAGCTGTGGCTTGGCTTATTTGCATCAGATATGTGAACCACACATAGTGCATCGCGACATAAAGTCAAGCAACATACTCCTTAATGAAAATTTTGAGGCACATGTTGCTGATTTTGGTTTGTCAAGATTGATTCTTCCATATCAAACTCATGTTACCACTGAACTTGTTGGTACATTAGGCTACATTCCCCCTGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGGGTTGTGATGCTCGAGCTTCTAACTGGAAGGAGGCCTGTAGATGTATGCAAGCCAAAAATGACAAGGGAGTTGGTTGGCTGGGTTCAACAAATGAGAATTGAAGCAAAACAAGATCAAGTTTTTGATCCTCTTCTGAGAGGGAAAGGGTTTGAAGGAGAGATGCTGAAGGTGCTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTTGCATCAGAGAACCAGCCAACACAGAAATAA 3297 0.4252 MTNHHFTHSIPLVFLMSSPSPSSSSSSLYMVSNFMVSIILPLFLFSFFVVHVSSCNQIDKLSLLAFSRNISTTPPFPSLDWSDSLDCCAWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGTLHHRVFSLLTHLLVLDFSYNHLSGELPPFVGDNSGAVIQELDLSSNFFNGTLPNSLLENLAAAAAGGSLVSLNVSNNSFVGHIPTSLFCINDHNSSSLRFLDYSSNDFDGAIQPGLGACSKLEKFRAGFNFLSGPIPSDLFDAVSLTEISLPLNRLNGTIGDGIVGLTNLTVLELYSNHFTGFIPREIGKLSKLERLLLHVNNLTGTMPPSLMNCVNLVVLNLRVNLLEGNLSAFNFSGFLSLTTLDLGNNYFIGGLPPTLYACKSLSAVRFASNKLEGEISPRILELESLSFLSISTNKLRNVTGALTILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPGGFQKLQVLGFGGCNFTGQIPGWLVKLKKLEALDLSFNQISGPIPPWLGTLPQLFYMDLSVNLLTGVFPLELTELPALASQQANDKVERTYLELPVFANANNVSLLQYNQLSALPPAIYLGNNHLNGTIPIEIGKLKALHQLDVKNNSFSGDIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGGQFDTFSYSSFEGNSQLCGPVIQRSCSQQNTTTNTTAASRSTNKRVMIALVITVSFGFGSLITVLTLWILSKRRVNPGGELDKIEMESISAYSNNGIHPEVDKEASLVVLFSNKNNETKDLTIFDILKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVTLKGYCVHEGFRLLMYTYMENGSLDYWLHERPDGASELDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLNENFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMTRELVGWVQQMRIEAKQDQVFDPLLRGKGFEGEMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVASENQPTQK 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02301 1098 FunFam Tyrosine-sulfated glycopeptide receptor 1 375 713 - -
Viun10g02301 1098 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Viun10g02301 1098 ProSiteProfiles Leucine-rich repeat profile. 640 662 IPR001611 GO:0005515
Viun10g02301 1098 SMART serkin_6 815 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02301 1098 Gene3D Phosphorylase Kinase; domain 1 778 890 - -
Viun10g02301 1098 PRINTS Leucine-rich repeat signature 638 651 - -
Viun10g02301 1098 PRINTS Leucine-rich repeat signature 125 138 - -
Viun10g02301 1098 SUPERFAMILY L domain-like 584 701 - -
Viun10g02301 1098 SMART LRR_typ_2 122 146 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 305 329 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 147 171 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 505 529 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 426 449 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 638 662 IPR003591 -
Viun10g02301 1098 SMART LRR_typ_2 378 402 IPR003591 -
Viun10g02301 1098 Pfam Leucine Rich Repeat 380 399 IPR001611 GO:0005515
Viun10g02301 1098 FunFam Leucine-rich repeat receptor protein kinase MSP1 780 890 - -
Viun10g02301 1098 SUPERFAMILY L domain-like 54 289 - -
Viun10g02301 1098 Gene3D Ribonuclease Inhibitor 354 717 IPR032675 -
Viun10g02301 1098 Gene3D Transferase(Phosphotransferase) domain 1 891 1098 - -
Viun10g02301 1098 SUPERFAMILY Protein kinase-like (PK-like) 801 1086 IPR011009 -
Viun10g02301 1098 ProSiteProfiles Protein kinase domain profile. 815 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02301 1098 SUPERFAMILY L domain-like 227 557 - -
Viun10g02301 1098 Pfam Leucine rich repeat 596 651 IPR001611 GO:0005515
Viun10g02301 1098 Gene3D Ribonuclease Inhibitor 280 353 IPR032675 -
Viun10g02301 1098 Gene3D Ribonuclease Inhibitor 200 279 IPR032675 -
Viun10g02301 1098 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 370 - -
Viun10g02301 1098 Gene3D Ribonuclease Inhibitor 56 199 IPR032675 -
Viun10g02301 1098 ProSitePatterns Protein kinases ATP-binding region signature. 821 844 IPR017441 GO:0005524
Viun10g02301 1098 Pfam Protein kinase domain 816 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02301 1098 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 284 1087 - -
Viun10g02301 1098 Pfam Leucine Rich repeat 506 520 IPR001611 GO:0005515
Viun10g02301 1098 FunFam Leucine-rich repeat receptor-like protein kinase 891 1097 - -
Viun10g02301 1098 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Viun10g02301 1098 FunFam Leucine-rich repeat receptor-like kinase 60 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02301 Viun-Chr10 37546301 37550063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02301 22 755 Miscellaneous Gene Families AT1G17250 50.336 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Viun10g02301 Pkinase 5.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02301 - - gmx:100781943 1854.34