Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02291 ATGGAGAACATAGTTTCCATACTTGATCACGTGCCTGTGGGATTCAGGTTCCGTCCCACAGATGAGGAACTTGTCAACTATTACCTCAAACACAAGTTGCTCGGTGATGATTTCTCTGTTCAGGTCATTCCAGAGATCGACCTTTGCAGAGTGGAACCTTGGGACGTGCCAGCAAAATCAGTGATAAAATCCGATGACCCAGAATGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCCAATAGTAAAAGGGTCAATAGGACCACCGAACATGGTTTCTGGAAAGCCACTGGAAATGACCGTAAAATTAGGATTGGTGGCACTAACAATGTCATTGGGACAAAGAAGACTCTTGTTTTTCACGAAGGCCGTGTTCCTCGTGGTGCCAAAACCAACTGGGTTATTCATGAATATCATGCTCTTACCTCCCATGAAAGCCAGACTTTCGTTTTATGCCGCTTGATGAAGAAATTTGAGAAAAAAAATGAAGGGGGAATTGAGGCACCAAACCTTCCTGACTATGGAAATCCGGTACCAGCTGAAGAAATTCCATCTGTAGTAAATGTTTCACCTAGAGTGATTGTGGATCCAATCTCTTCGGATGATATTTTCTTCCCCCCAGTAGAACAATCTGCAGTTGGTATTGAACTGGAAGAAATTTTCCGAAACCCCTCATTGCTCGATGCTTGTTTTGGAAATGAAAGCTCCAATGCGGCGCAAATTCCATTTCGAGATACTGATGATGAAGATGACTTCGTAAATTCAATATGGGTCGATGATGAAGAGCTTGTGATCAATGAAGAAAGAAGACACTGTTTTGTCAATTCTTCCACCCAACCAAAGTCATTGAGAAGGGTATACAATGCAAGCACTGGCACAGATGCTGAACTTGTCTCTAATCTGCATGCCAACATTTGTTCTGGTGAATACTCTGGCATGAGTAGTATAGATTCTAATCATGAAGCACACAAAGAAAAAAAGGAGAGTATCATTCAAGATGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAACCTATTGAAATTTCTAGTTCTTCCTCCACTCGAACAAGATTGGAAAATCGGTGTAATCCAAGACCAGACAACTTCATATTACAAAAAACTGTTGCAGGAAGACCACAAACACAAAAGAAGGTTTCAAACAATGCAGTATCCCATGTTGAGACTAGGAGGGAATTGGTGACTGTGAAATCAGAGAAAGATGAGAAAAAGGCTCAAAATTCTAGTTCAAGAGAGATCCTCAAAATCAGAAGCCATCAATCCTCTGATGTCAATAGCAAAGGTTCTTTCTTTCACATGGAAACGACTTCATCAAACCAAAACCTATTTCCACGTTCTGTATATCTTGTCAATGTTGTCATAGGGATTGTGTTGTTAATAGTCATTAGTTGTGATGTATTATTATGTTAG 1443 0.4061 MENIVSILDHVPVGFRFRPTDEELVNYYLKHKLLGDDFSVQVIPEIDLCRVEPWDVPAKSVIKSDDPEWFFFSSVDYKYSNSKRVNRTTEHGFWKATGNDRKIRIGGTNNVIGTKKTLVFHEGRVPRGAKTNWVIHEYHALTSHESQTFVLCRLMKKFEKKNEGGIEAPNLPDYGNPVPAEEIPSVVNVSPRVIVDPISSDDIFFPPVEQSAVGIELEEIFRNPSLLDACFGNESSNAAQIPFRDTDDEDDFVNSIWVDDEELVINEERRHCFVNSSTQPKSLRRVYNASTGTDAELVSNLHANICSGEYSGMSSIDSNHEAHKEKKESIIQDDFWAVETSSCDSTADEPIEISSSSSTRTRLENRCNPRPDNFILQKTVAGRPQTQKKVSNNAVSHVETRRELVTVKSEKDEKKAQNSSSREILKIRSHQSSDVNSKGSFFHMETTSSNQNLFPRSVYLVNVVIGIVLLIVISCDVLLC 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02291 480 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 377 - -
Viun10g02291 480 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Viun10g02291 480 MobiDBLite consensus disorder prediction 407 421 - -
Viun10g02291 480 MobiDBLite consensus disorder prediction 347 364 - -
Viun10g02291 480 MobiDBLite consensus disorder prediction 407 436 - -
Viun10g02291 480 MobiDBLite consensus disorder prediction 347 369 - -
Viun10g02291 480 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Viun10g02291 480 MobiDBLite consensus disorder prediction 422 436 - -
Viun10g02291 480 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Viun10g02291 480 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02291 Viun-Chr10 37493130 37496409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02291 8 159 NAC Transcription Factor Family AT3G49530 55.696 1.42e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02291 NAM 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02291 - - gsj:114390609 635.18