Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02290 ATGTTTCATTCAAACTACAAACACAGAGTTCAGTGTTCACCAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTACAGAACAAGAACTCGTCGATTTCTACCTCAAACACAAGTTGCTGGCTGATGATTCCCGTGTCGACGTTATCCCTGTCATTGACCTCTGCCATGTGGAACCTTCGGATGTACCAGGGATACTTGCAAAATCACGGATTCGATTTGGTGACCCAGACTGGTTTTTCTTCAGTCCGGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGGTTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAACACCAACACTCTGATTGCCACAAAGAAGAATCTTGTTTACTACAAAGGAAGTGTTTCCTGTGGTGTCAAGTCCTACTGGGTTATTCACGAATATCACGCTGTTACCTTTGATGAAAGCGAGAGGTGTTTTGTTTTATGCCGCTTGATGAGAAGAAAATCTGGGAAAACAACTGAAGGGGGAATCGATCCAATAATCTGTGGTGAAGAGGAGCCCAGCATAATCAAGGTTTCTGACTATGAAAATCAGGCAACAGAAGAAGGAATTCCATATGGAGGTACTTTGCCAGTAGTGGAAACAATCTTTCAGGCTAACCCTCAGCCAGTGACATACGTCTCCCAAATACAATCGTCTCCACCAGAAGAAGCATCTTTTCCAAATTACCCACTAAACAATGCCTGTTTTGGAAATGAAAAGAGCTTTATGCAAGATGAGTACCTGAATCGAATTATAGCCGAAGAAAACTTAGATAATGATGAAGAAAGTAGTTGTACTTTTGTTGATAATTCTTCTCAAAAGGACACAAATATCGTGGATAGTTCATCTGTTCACAATAAATATTTCAATTATGACGAATACCATTCATCAAAAAGGTTGAAATTATCAAAAGATGTTGCTGATGATGCATCAACAAATCAAGAAACAAAAGAAAGTATGATTGGAGATGGATTTTGGGGAATGGAATCATCCTCTTGTGATTCAACTCCAAATGGAGTTTTGGAGATTAATTGCACTGAAGTTTCTAGTTCTCGGTCCATTTCATGA 1116 0.397 MFHSNYKHRVQCSPKSMGKIVGVGFRPTEQELVDFYLKHKLLADDSRVDVIPVIDLCHVEPSDVPGILAKSRIRFGDPDWFFFSPVDFKYSNSKRVNRKTEKGFWKATGKDRDIRSWNTNTLIATKKNLVYYKGSVSCGVKSYWVIHEYHAVTFDESERCFVLCRLMRRKSGKTTEGGIDPIICGEEEPSIIKVSDYENQATEEGIPYGGTLPVVETIFQANPQPVTYVSQIQSSPPEEASFPNYPLNNACFGNEKSFMQDEYLNRIIAEENLDNDEESSCTFVDNSSQKDTNIVDSSSVHNKYFNYDEYHSSKRLKLSKDVADDASTNQETKESMIGDGFWGMESSSCDSTPNGVLEINCTEVSSSRSIS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02290 371 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Viun10g02290 371 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Viun10g02290 371 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Viun10g02290 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 289 - -
Viun10g02290 371 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02290 Viun-Chr10 37489576 37492212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02290 21 169 NAC Transcription Factor Family AT4G35580 46.104 8.70e-38 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02290 NAM 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02290 - - var:108346924 564.688