Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02288 ATGAGGATTGTAGGAATGGGTTTTCGCCCCACAGATGAAGAACTCGTCGACTTCTACCTCAAACACAGATTGCTCGGTGATGATCCCCGTGTTCGCGTCATGACTGACATAGATCTTTGCGATGTTGAACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAAAGACCGAGAATGGTGTTTCTTCAGTCCTGTTAAATTGATGTCCTCAAATAGTAAAAGGTTTAACAGGAGAACCAAGTCTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAAGCAGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCCAATGTGGTCGTGCTTCCAAAGGTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTTGAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGATAAAGAAACCTGAGAAAAAAACTGAAGGAGGAACTGCTGCACTGATATGTGATGAAGGGGAATCCAGTAGAAGCGTGGTTTCTGACTATGAAAATCAGGCGATAGCAGAAGGAGTTCCATCCGGAGGTACTCTAACCGGAATGGAAACAATCTGTCAGGTAACATATCAGGCAGAAAAATGCATCTCCCCTACAGAACCGTCACTAATTGAAATTGAGCAGGATGACGATGCCTATTTTAGAAATGAAAACAACAATGGGCGGAGTCCTTCTGAAATTATGCAGATTCCTTACGAAACTATGCACACTCCTTGTGAAACTATACACACTCCTTATGAAATTATGCAGATTCCTTGTGAAACTATGCAGACTCTTTATGAAACTTTGCAGATTCCTTGTGAAACTATGCAAAGTTCTTGTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTCCTTTTGAAAGTATGCATACTCCTTGTGAACCTGTACAGACTCCTTGTGAAACTATGCAGATTTCTTGTGAAAGTATGCAGAATCCTTGTGAACCTGTGCAGATTTCTTGTGAAACTATGCAGATTTCTCATGAAACCAACCAAATTCCTTTTGAAATTTTGCAGTTTCCTTTAGAAACTATGCAGACTCCTTCTCAAACTACACAAATTCCTTTTGAAACTATAGAAGTTCCTTTTCAAACTACGCAAACTCCATTAGAAACTACACAAATTCTACCTAAACTCCCGAATTCATTATTAGCCGATGAATATTTAGTCAATCAATCAAAGTCACTGAAAAGGGCATATTGCGAAAGCTCTTATAGAGATGCAGAAGTCGTCCCTGAACTGGACACTAGTTTTGAGGATATTTCAACTTTGTATACTGAGTATCTTAACTCAGAGGAATATCATGCATTAAAAAGGTTTAAAACATCATATGATGTTGGACATGGTGACACACATCTTCTATTTTCCAGCCAAGAAGCAAGTGAAGAGAAACAAGAAAGTATATTTCAAGATGACTTATGGGGATGGGAGACATCCTCATGTGACTCTACAACAAATAAACTTGTGGAGATCAATTACAGTGAAATATCTAGCTTTCCTTGCACTTAA 1644 0.3929 MRIVGMGFRPTDEELVDFYLKHRLLGDDPRVRVMTDIDLCDVEPWEVPVMLAKSVIPFKDREWCFFSPVKLMSSNSKRFNRRTKSGFWKPTGKDRDVRSRDTNTVIGTKKTLVFQCGRASKGVNSNWVIHEYHALNFLESQNAFVLCRLIKKPEKKTEGGTAALICDEGESSRSVVSDYENQAIAEGVPSGGTLTGMETICQVTYQAEKCISPTEPSLIEIEQDDDAYFRNENNNGRSPSEIMQIPYETMHTPCETIHTPYEIMQIPCETMQTLYETLQIPCETMQSSCESMQTPCETMQTSFESMQTPCETMQTSFESMQTPCETMQTPFESMHTPCEPVQTPCETMQISCESMQNPCEPVQISCETMQISHETNQIPFEILQFPLETMQTPSQTTQIPFETIEVPFQTTQTPLETTQILPKLPNSLLADEYLVNQSKSLKRAYCESSYRDAEVVPELDTSFEDISTLYTEYLNSEEYHALKRFKTSYDVGHGDTHLLFSSQEASEEKQESIFQDDLWGWETSSCDSTTNKLVEINYSEISSFPCT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02288 547 Gene3D NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Viun10g02288 547 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Viun10g02288 547 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 299 - -
Viun10g02288 547 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Viun10g02288 547 Pfam No apical meristem (NAM) protein 4 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02288 Viun-Chr10 37477738 37480789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02288 4 154 NAC Transcription Factor Family AT3G49530 46.795 2.70e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02288 NAM 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02288 - - vun:114167348 1015.37