Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02280 ATGTTTCATTCAAACTACAAACACAGAGTTCAGTGTTCACCAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTATAGAACAAGAACTCGTCGATTTCTACCTCAAACACAAGTTGCTGGGTGATGATTCCCGTGTCGACGTTATCCCTGTCATTAACCTCTGCCATGTGGAACCTTCGGATGTACCAGGGATACTTGCAAAATCACGGATTCGATTTGGTGACCCAGACTGGTTTTTCTTCAGTCCGGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGGTTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAACACCAACACTCTCATTGCCACAAAGAAGAATCTTGTTTACTACAAAGGAAGTGTTTCCTGTGGTGTCAAGTCCGACTGGGTTATTCACGAATATCACGCTGTTACCTTTCATGAAAGCGAGAATGCTTTTGTGTTATGCCGCTTGATAAAGAAACCTGAGAAAAAAACTGAAGGAGGAACTGCTGCACTGATATGTGATGAAGGGGAATCCAGTAGAAGCGTGGTTTCTGACTATGAAAATCAGGCGATAGCAGAAGGAGTTCCATCCGGAGGTACTCTAACCGGAATGGAAACAATCTGTCACGTAACATATCAGGCAGAAAAATGCATCTCCCCTACAGAACCGTCACTAATTGAAATTGAGCAGGATGACGATGCCTATTTTAGAAATGAAAACAACAATGGGCGGAGTCCTTCTGAAATTATGCAGATTCCTTACGAAACTATGCACACTCCTTGTGAAACTATGCACACTCCTTATGAAATTATGCAGATTTCTTGTGAAACTATGCAGACTCTTTATGAAACTTTGCAGATTCCTTGTGAAACTATGCAAAGTTCTTGTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTCCTTTTGAAAGTCTGCAGACTCCTTGTGAACCTGTACAGACTCTTTGTGAAAGTATGCAGATTTCTTGTGAAAGTATGCAGAATCCTTGTGAACCTATGCAGATTTCTTGTGAAACTATGCAGATTTCTCATGAAACCAACCAAATTCCTTTTGAAATTTTGCAGTTTCTTTTTGAAACTCCTTTTCAAACTATGCAAACTCCATTAGAAACTAAACAAATTCTACCTAAACTCCCGAATTCATTATTAGCCGATGAATATTTAGTCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCTCTTATAGAGATGCAGAAGTCGTCCCTGAACGGGACGCTAGTTTTGAGGATATTTCAAGTTTGTATACTGAGTATCTTAACTCAGAGGAATATCATGTATTAAAAAGGTTTAAAACATCATATGATGTTGGACATGGTGACACACATCTTCTATTTTCCGGCCAAGAAGCAAGTGAAGAGAAACAAGAAAGTATATTTCAAGATGATTTTTGGGGATTGGAGACATCCTCATGTGACTCTACAACAAATAAACTTGTGGAGATCAATTACAGTGAAATATCTAGCTTTCTTTGCACTTAA 1686 0.3921 MFHSNYKHRVQCSPKSMGKIVGVGFRPIEQELVDFYLKHKLLGDDSRVDVIPVINLCHVEPSDVPGILAKSRIRFGDPDWFFFSPVDFKYSNSKRVNRKTEKGFWKATGKDRDIRSWNTNTLIATKKNLVYYKGSVSCGVKSDWVIHEYHAVTFHESENAFVLCRLIKKPEKKTEGGTAALICDEGESSRSVVSDYENQAIAEGVPSGGTLTGMETICHVTYQAEKCISPTEPSLIEIEQDDDAYFRNENNNGRSPSEIMQIPYETMHTPCETMHTPYEIMQISCETMQTLYETLQIPCETMQSSCESMQTPCETMQTSFESMQTPCETMQTSFESMQTPCETMQTSFESMQTPCETMQTPFESLQTPCEPVQTLCESMQISCESMQNPCEPMQISCETMQISHETNQIPFEILQFLFETPFQTMQTPLETKQILPKLPNSLLADEYLVTQSKSLKRAYCESSYRDAEVVPERDASFEDISSLYTEYLNSEEYHVLKRFKTSYDVGHGDTHLLFSGQEASEEKQESIFQDDFWGLETSSCDSTTNKLVEINYSEISSFLCT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02280 561 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
Viun10g02280 561 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 321 - -
Viun10g02280 561 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Viun10g02280 561 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Viun10g02280 561 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02280 Viun-Chr10 37420985 37424727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02280 21 176 NAC Transcription Factor Family AT4G35580 44.720 5.73e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02280 NAM 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02280 - - vun:114167348 1053.51