Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02277 ATGTGTTCACCAAAACCAACGGAGATTGTGGGATACGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTTTACCTCAAACACAAGTTGCTCGGTGATGATCCCCGTGTCCACGTCTTGACTCACATAGATCTCTGCGATGTGGAACCTTGGGAAGTACCAGCGTTGTTAGCAAAATCAGAAGTACAATTCAAAGACCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAATAGTAAAAGGGTTAATAGAAGAACCAAGTGTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAACCTGGGACACCAACACTGTAATAGGAACTAAGAAGACTCTTGTTTTCCATAATGGCTCAGCTTCCAAAGGTGTCAAGGCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCATCAAAGCCAGAAGGCTTTTGTTTTATGCCGGTTGATAAAGAAACCTGGGAAAATAACTGAAGGAAAAACTGATGCAGTGATATGTGATGAAGTTGAATCCAGTATAAACCTGGTTTCTGACTATGAAAATCAGACAAGAACAGAAAGAGTTCCATCTGGAGGTATGTTTACCGGGGTGGAAACAATCTGTGAGGCAACAGATCAAACAGACAAAGGCATCTCGCCAATTGAAGCTTCAATAATTGATGTTGAGCAGTATGAAACATCTTCTCTAAACTCTTCATCAATCAATGCCTATTTTAAAAATGAAAACAATAATACTAAAATTTCATTCAAAAGTATGCAGAATGCATATGACAATATCCAAATTCTAAATGAAAATAATCAAATTTCAAGTCCAAATTTAAAAACTTCATTGAGAAATTTTCATACACCTTCTGAGAGTACATGGATCCCATATGAAATGACTGATATTTCACAAATTCCATTTAAAAGTATCCAGAATTCATATGAAATTAGCCAAATTTCATATGAAATTTTGCAAACTCTATTGAAAAGTATCGGGAATTCAAATGAAATTAGTCAAATTCCATTTGACAATACCCAGATTTCACATGAAAAATTTCAGACTTCATGTGAAAATAACCAGATTCCATTTCAAATTACTCAGAATCCATGTGAAATTACCCACACTTCATTTGAAGTTACCCAGATTCCGAATGAAGATTCGCAAGCTCCATTTAAAATTATCGAGACTCCATTTGAAAATAACTCAATTACATTTAAAACTACCCAAATTCCATATAAAAATTCACAGATAACATCTGAAACTGTACAACATTCATTTGAAACTACGCAAACTCCTTTTGAAACTATACCGAAAGAGGAGTTGCCGAATTCTCATGAGAGTTTAACAATTGATGAAGAAAACATGTTCGGTTTTCTTAATTGCTTCACTCAATCAGAGTCATTGAAAAGAGCATACTACGAAAGCACATGTACAGATGAAGAAGTCGTCCCTAATCAGGATGCTAATATTGAGGATATTCCAACTATGAGTACTGAATATCTTATTTCAGACAAATACCATTCATTAAAATGGTTTAAAACATCATATGATATTGGACATGGTGACACATGTCTTCTATCTTCTAACCAAGAACCAAATCAAGAAAGTATATGGCAAGATGATTTCTGGGGGAGTGGAGACATCATGTTATGA 1653 0.3545 MCSPKPTEIVGYGFRPTDEELVDFYLKHKLLGDDPRVHVLTHIDLCDVEPWEVPALLAKSEVQFKDPEWFFFSPVDFKYSNSKRVNRRTKCGFWKPTGKDRDVRTWDTNTVIGTKKTLVFHNGSASKGVKANWVIHEYHALNFHQSQKAFVLCRLIKKPGKITEGKTDAVICDEVESSINLVSDYENQTRTERVPSGGMFTGVETICEATDQTDKGISPIEASIIDVEQYETSSLNSSSINAYFKNENNNTKISFKSMQNAYDNIQILNENNQISSPNLKTSLRNFHTPSESTWIPYEMTDISQIPFKSIQNSYEISQISYEILQTLLKSIGNSNEISQIPFDNTQISHEKFQTSCENNQIPFQITQNPCEITHTSFEVTQIPNEDSQAPFKIIETPFENNSITFKTTQIPYKNSQITSETVQHSFETTQTPFETIPKEELPNSHESLTIDEENMFGFLNCFTQSESLKRAYYESTCTDEEVVPNQDANIEDIPTMSTEYLISDKYHSLKWFKTSYDIGHGDTCLLSSNQEPNQESIWQDDFWGSGDIML 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02277 550 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Viun10g02277 550 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Viun10g02277 550 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Viun10g02277 550 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 273 - -
Viun10g02277 550 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02277 Viun-Chr10 37412184 37415594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02277 10 176 NAC Transcription Factor Family AT3G49530 45.349 6.43e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02277 NAM 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02277 - - vun:114167597 1134.4