Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02276 ATGTGTTCACCAAAACCAACGGAGATTGTGGGATACGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTTTACCTCAAACACAAGTTGCTCGGTGATGATCCCCGTGTCCACGTCTTGACTCACATAGATCTCTGCGATGTGGAACCTTGGGAAGTACCAGCGTTGTTAGCAAAATCAGAAGTACAATTCAAAGACCCAGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAATAGTAAAAGGGTTAATAGAAGAACCAAGTGTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAACCTGGGACACCAACACTGTAATAGGAACTAAGAAGACTCTTGTTTTCCATAATGGCTCAGCTTCCAAAGGTGTCAAGGCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCATCAAAGCCAGGCTTTTGTTTTATGCCGGTTGATAAAGAAACCTGGGAAAATAACTGAAGGAAAAACTGATGCAGTGATATGTGATGAAGTTGAATCCAGTATAAACCTGGTTTCTGACTATGAAAATCAGACAAGAACAGAAAGAGTTCCATCTGGAGGTATGTTTACCGGGGTGGAAACAATCTGTGAGGCAACAGATCAAACAGACAAAGGCATCTCGCCAATTGAAGCTTCAATAATTGATGTTGAGCAGTATGAAACATCTTCTCTAAACTCTTCATCAATCAATGCCTATTTTAAAAATGAAAACAATAATACTAAAATTTCATTCAAAAGTATGCAGAATGCATATGACAATATCCAAATTCTAAATGAAAATAATCAAATTTCAAGTCCAAATTTAAAAACTTCATTGAGAAATTTTCATACACCTTCTGAGAGTACATGGATCCCATATGAAATGACTGATATTTCACAAATTCCATTTAAAAGTATCCAGAATTCATATGAAATTAGCCAAATTTCATATGAAATTTTGCAAACTCTATTGAAAAGTATCGGGAATTCAAATGAAATTAGTCAAATTCCATTTGACAATACCCAGATTTCACATGAAAAATTTCAGACTTCATGTGAAAATAACCAGATTCCATTTCAAATTACTCAGAATCCATGTGAAATTACCCACACTTCATTTGAAGTTACCCAGATTCCGAATGAAGATTCGCAAGCTCCATTTAAAATTATCGAGACTCCATTTGAAAATAACTCAATTACATTTAAAACTACCCAAATTCCATATAAAAATTCACAGATAACATCTGAAACTGTACAACATTCATTTGAAACTACGCAAACTCCTTTTGAAACTATACCGAAAGAGGAGTTGCCGAATTCTCATGAGAGTTTAACAATTGATGAAGAAAACATGTTCGGTTTTCTTAATTGCTTCACTCAATCAGAGTCATTGAAAAGAGCATACTACGAAAGCACATGTACAGATGAAGAAGTCGTCCCTAATCAGGATGCTAATATTGAGGATATTCCAACTATGAGTACTGAATATCTTATTTCAGACAAATACCATTCATTAAAATGGTTTAAAACATCATATGATATTGGACATGGTGACACATGTCTTCTATCTTCTAACCAAGAACCAAATCAAGAAAGTATATGGCAAGATGATTTCTGGGGGAGTGGAGACATCATGTTATGA 1650 0.3545 MCSPKPTEIVGYGFRPTDEELVDFYLKHKLLGDDPRVHVLTHIDLCDVEPWEVPALLAKSEVQFKDPEWFFFSPVDFKYSNSKRVNRRTKCGFWKPTGKDRDVRTWDTNTVIGTKKTLVFHNGSASKGVKANWVIHEYHALNFHQSQAFVLCRLIKKPGKITEGKTDAVICDEVESSINLVSDYENQTRTERVPSGGMFTGVETICEATDQTDKGISPIEASIIDVEQYETSSLNSSSINAYFKNENNNTKISFKSMQNAYDNIQILNENNQISSPNLKTSLRNFHTPSESTWIPYEMTDISQIPFKSIQNSYEISQISYEILQTLLKSIGNSNEISQIPFDNTQISHEKFQTSCENNQIPFQITQNPCEITHTSFEVTQIPNEDSQAPFKIIETPFENNSITFKTTQIPYKNSQITSETVQHSFETTQTPFETIPKEELPNSHESLTIDEENMFGFLNCFTQSESLKRAYYESTCTDEEVVPNQDANIEDIPTMSTEYLISDKYHSLKWFKTSYDIGHGDTCLLSSNQEPNQESIWQDDFWGSGDIML 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02276 549 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
Viun10g02276 549 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 272 - -
Viun10g02276 549 SUPERFAMILY NAC domain 9 157 IPR036093 GO:0003677|GO:0006355
Viun10g02276 549 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Viun10g02276 549 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02276 Viun-Chr10 37412180 37415600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02276 10 175 NAC Transcription Factor Family AT3G49530 46.243 3.80e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02276 NAM 2.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02276 - - vun:114167597 1127.85