Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02275 ATGGACTTGACACTGGGGGGCAGCAAGGATGAGGGGAATTTGCAGGGATCAGGAGGTGGTGCTGCTTCTTCTGTGTTTCCTCATCATGCAACTGCTAGTTCTTCTGCCGATGCTAACGTTAGCAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACGCCGAGTGATGTGGGTAAGCTGAACCGGTTGGTGATACCAAAGCAGCACGCTGAGAAGTATTTCCCTCTTGATTCCTCGGCCAATGAGAAGGGGCTGCTGCTAAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGTGACATTGTGTCCTTCCAGCGAGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCCGATCACCATCACCATCATGGCCCTGACCCTTCAGCCTCCCTTTTCACACCTTTCTTCCTTCCCAATCAGCCTCACTTCATCAGATGGGGTGCCACTGGCAGATTCTACTCCCTCCCCTCTCCCAACCCACCACGCCACCATGACCATTTGAACCAACACCTCAATTACAACAACACCATGTATCATCAACATCACCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGCTGCTGCTGGAGGAAATGGAACTCATCACTACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCCGTCTATTACCTCAGGTCTACCCCCCCACCAATGCCATTCGCCGATCACCAAACCTTGAACACAAGACAACAACAACAACAAGAGGGGGGGAATGTTTCTTCTCATACTCCTATAATCATTGATTCTGTTCCGGTTGCTCACCACCACCATCATCTCCACCACCACCACCATGGTGGTTCTAGTACTAGCACAAGTCCTAGCACTGCAGGGAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCGGCAAGGTTTGGGGATCAGAGAGGGGAACAACAACAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1257 0.4901 MDLTLGGSKDEGNLQGSGGGAASSVFPHHATASSSADANVSNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSASLFTPFFLPNQPHFIRWGATGRFYSLPSPNPPRHHDHLNQHLNYNNTMYHQHHHPFHHQLQGAAAAAGGNGTHHYNYHDMSSSGSGSVYYLRSTPPPMPFADHQTLNTRQQQQQEGGNVSSHTPIIIDSVPVAHHHHHLHHHHHGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQQQQPSMLFDLDPSLQYRQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02275 418 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 357 IPR044800 GO:0003700
Viun10g02275 418 MobiDBLite consensus disorder prediction 361 418 - -
Viun10g02275 418 MobiDBLite consensus disorder prediction 1 52 - -
Viun10g02275 418 MobiDBLite consensus disorder prediction 27 47 - -
Viun10g02275 418 SMART B3_2 53 158 IPR003340 GO:0003677
Viun10g02275 418 ProSiteProfiles B3 DNA-binding domain profile. 53 158 IPR003340 GO:0003677
Viun10g02275 418 FunFam B3 domain-containing protein 46 166 - -
Viun10g02275 418 MobiDBLite consensus disorder prediction 270 295 - -
Viun10g02275 418 Gene3D - 47 165 IPR015300 -
Viun10g02275 418 MobiDBLite consensus disorder prediction 361 409 - -
Viun10g02275 418 SUPERFAMILY DNA-binding pseudobarrel domain 49 154 IPR015300 -
Viun10g02275 418 Pfam B3 DNA binding domain 53 157 IPR003340 GO:0003677
Viun10g02275 418 MobiDBLite consensus disorder prediction 269 326 - -
Viun10g02275 418 CDD B3_DNA 51 140 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02275 Viun-Chr10 37398109 37399981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02275 38 342 RAV Transcription Factor Family AT2G46870 47.712 9.97e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g02275 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02275 K09287 - gmx:100778733 546.199