Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02274 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAGGAGGAAGAGGAAACAGCAGAAGAAATCGTGACGAGAGAAGAAAGCAGCAGGTTGTTACACCAACACCAGGATGCAGCAGCTTCCAATTTCATCATCACCAATCATCATAATCATCATCACCACCACACAACGAAGCAGCTAGATTTCATGGACTTGACACTGGGGGGCAGCAAGGATGAGGGGAATTTGCAGGGATCAGGAGGTGGTGCTGCTTCTTCTGTGTTTCCTCATCATGCAACTGCTAGTTCTTCTGCCGATGCTAACGTTAGCAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACGCCGAGTGATGTGGGTAAGCTGAACCGGTTGGTGATACCAAAGCAGCACGCTGAGAAGTATTTCCCTCTTGATTCCTCGGCCAATGAGAAGGGGCTGCTGCTAAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGTGACATTGTGTCCTTCCAGCGAGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCCGATCACCATCACCATCATGGCCCTGACCCTTCAGCCTCCCTTTTCACACCTTTCTTCCTTCCCAATCAGCCTCACTTCATCAGATGGGGTGCCACTGGCAGATTCTACTCCCTCCCCTCTCCCAACCCACCACGCCACCATGACCATTTGAACCAACACCTCAATTACAACAACACCATGTATCATCAACATCACCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGCTGCTGCTGGAGGAAATGGAACTCATCACTACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCCGTCTATTACCTCAGGTCTACCCCCCCACCAATGCCATTCGCCGATCACCAAACCTTGAACACAAGACAACAACAACAACAAGAGGGGGGGAATGTTTCTTCTCATACTCCTATAATCATTGATTCTGTTCCGGTTGCTCACCACCACCATCATCTCCACCACCACCACCATGGTGGTTCTAGTACTAGCACAAGTCCTAGCACTGCAGGGAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCGGCAAGGTTTGGGGATCAGAGAGGGGAACAACAACAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1455 0.4852 MELMQEVKGYSDSREEEEEEETAEEIVTREESSRLLHQHQDAAASNFIITNHHNHHHHHTTKQLDFMDLTLGGSKDEGNLQGSGGGAASSVFPHHATASSSADANVSNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSASLFTPFFLPNQPHFIRWGATGRFYSLPSPNPPRHHDHLNQHLNYNNTMYHQHHHPFHHQLQGAAAAAGGNGTHHYNYHDMSSSGSGSVYYLRSTPPPMPFADHQTLNTRQQQQQEGGNVSSHTPIIIDSVPVAHHHHHLHHHHHGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQQQQPSMLFDLDPSLQYRQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02274 484 MobiDBLite consensus disorder prediction 1 37 - -
Viun10g02274 484 MobiDBLite consensus disorder prediction 427 475 - -
Viun10g02274 484 SUPERFAMILY DNA-binding pseudobarrel domain 115 220 IPR015300 -
Viun10g02274 484 Gene3D - 113 231 IPR015300 -
Viun10g02274 484 CDD B3_DNA 117 206 IPR003340 GO:0003677
Viun10g02274 484 Pfam B3 DNA binding domain 119 223 IPR003340 GO:0003677
Viun10g02274 484 MobiDBLite consensus disorder prediction 77 115 - -
Viun10g02274 484 ProSiteProfiles B3 DNA-binding domain profile. 119 224 IPR003340 GO:0003677
Viun10g02274 484 MobiDBLite consensus disorder prediction 335 392 - -
Viun10g02274 484 MobiDBLite consensus disorder prediction 93 113 - -
Viun10g02274 484 MobiDBLite consensus disorder prediction 427 484 - -
Viun10g02274 484 FunFam B3 domain-containing protein 112 232 - -
Viun10g02274 484 MobiDBLite consensus disorder prediction 336 361 - -
Viun10g02274 484 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 420 IPR044800 GO:0003700
Viun10g02274 484 SMART B3_2 119 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02274 Viun-Chr10 37397451 37399981 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02274 110 408 RAV Transcription Factor Family AT2G46870 48.333 1.28e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g02274 B3 2.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02274 K09287 - gmx:100778733 630.172