Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02272 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCCGATAGCAGAGAGGAGGAGGAGGAAGAGGAAACAGCAGAAGAAATCGTGACGAGAGAAGAAAGCAGCAGTAAGCACCACTACCCCTTTTCTTCTCCCTCTTTGTCTTTATCTCCTGCTCCTTCAATATCAAATTATACTTCTACTACTTCTGCTGCACGTCCTCATCACCATCATCATGTAATAAATATTCCTCACCAACAAAATCCATGGCTGGGGATGAATATTCATGATCATGATCATCATCTTCAGTCTCCAGAGACCACTGAATCTCACAATTCATCATCTGGGTTAGGGTTGTTACACCAACACCAGGATGCAGCAGCTTCCAATTTCATCATCACCAATCATCATAATCATCATCACCACCACACAACGAAGCAGCTAGATTTCATGGACTTGACACTGGGGGGCAGCAAGGATGAGGGGAATTTGCAGGGATCAGGAGGTGGTGCTGCTTCTTCTGTGTTTCCTCATCATGCAACTGCTAGTTCTTCTGCCGATGCTAACGTTAGCAACCTGCAGCAGCCTTCTGAGAAGGAGCACATGTTTGACAAAGTTGTGACGCCGAGTGATGTGGGTAAGCTGAACCGGTTGGTGATACCAAAGCAGCACGCTGAGAAGTATTTCCCTCTTGATTCCTCGGCCAATGAGAAGGGGCTGCTGCTAAATTTTGAGGACAGGAATGGTAAGTTATGGAGGTTCAGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCCGGTGACATTGTGTCCTTCCAGCGAGGTGTAGGGGAGTTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGCCCGATCACCATCACCATCATGGCCCTGACCCTTCAGCCTCCCTTTTCACACCTTTCTTCCTTCCCAATCAGCCTCACTTCATCAGATGGGGTGCCACTGGCAGATTCTACTCCCTCCCCTCTCCCAACCCACCACGCCACCATGACCATTTGAACCAACACCTCAATTACAACAACACCATGTATCATCAACATCACCATCCCTTTCATCACCAATTGCAAGGTGCTGCTGCTGCTGCTGGAGGAAATGGAACTCATCACTACAACTATCATGACATGAGTAGTTCAGGATCTGGCTCCGTCTATTACCTCAGGTCTACCCCCCCACCAATGCCATTCGCCGATCACCAAACCTTGAACACAAGACAACAACAACAACAAGAGGGGGGGAATGTTTCTTCTCATACTCCTATAATCATTGATTCTGTTCCGGTTGCTCACCACCACCATCATCTCCACCACCACCACCATGGTGGTTCTAGTACTAGCACAAGTCCTAGCACTGCAGGGAAAAGACTTAGGCTGTTTGGGGTGAATATGGAATGTGCTTCTTCAACATCAGAAGACCCCAACTGCTTCAGCTTATTGTCCTCATCTTCAATGGCACATGCGACAATGGCTAATTCCAATTCACCTCCCTCTTCTTCACTACCACCTCTTCAGCTTTTGAGGGAAGACTCACTTTCATCACCATCATCGGCAAGGTTTGGGGATCAGAGAGGGGAACAACAACAACAACCTTCAATGCTTTTTGATCTGGATCCTTCTTTGCAATACCGGCAGTGA 1680 0.4744 MELMQEVKGYSDSREEEEEEETAEEIVTREESSSKHHYPFSSPSLSLSPAPSISNYTSTTSAARPHHHHHVINIPHQQNPWLGMNIHDHDHHLQSPETTESHNSSSGLGLLHQHQDAAASNFIITNHHNHHHHHTTKQLDFMDLTLGGSKDEGNLQGSGGGAASSVFPHHATASSSADANVSNLQQPSEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHHHHHGPDPSASLFTPFFLPNQPHFIRWGATGRFYSLPSPNPPRHHDHLNQHLNYNNTMYHQHHHPFHHQLQGAAAAAGGNGTHHYNYHDMSSSGSGSVYYLRSTPPPMPFADHQTLNTRQQQQQEGGNVSSHTPIIIDSVPVAHHHHHLHHHHHGGSSTSTSPSTAGKRLRLFGVNMECASSTSEDPNCFSLLSSSSMAHATMANSNSPPSSSLPPLQLLREDSLSSPSSARFGDQRGEQQQQPSMLFDLDPSLQYRQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02272 559 MobiDBLite consensus disorder prediction 168 188 - -
Viun10g02272 559 MobiDBLite consensus disorder prediction 502 559 - -
Viun10g02272 559 ProSiteProfiles B3 DNA-binding domain profile. 194 299 IPR003340 GO:0003677
Viun10g02272 559 Pfam B3 DNA binding domain 194 298 IPR003340 GO:0003677
Viun10g02272 559 Gene3D - 188 306 IPR015300 -
Viun10g02272 559 MobiDBLite consensus disorder prediction 152 190 - -
Viun10g02272 559 SUPERFAMILY DNA-binding pseudobarrel domain 190 295 IPR015300 -
Viun10g02272 559 SMART B3_2 194 299 IPR003340 GO:0003677
Viun10g02272 559 MobiDBLite consensus disorder prediction 1 66 - -
Viun10g02272 559 MobiDBLite consensus disorder prediction 410 467 - -
Viun10g02272 559 CDD B3_DNA 192 281 IPR003340 GO:0003677
Viun10g02272 559 MobiDBLite consensus disorder prediction 83 109 - -
Viun10g02272 559 MobiDBLite consensus disorder prediction 37 62 - -
Viun10g02272 559 MobiDBLite consensus disorder prediction 502 550 - -
Viun10g02272 559 MobiDBLite consensus disorder prediction 411 436 - -
Viun10g02272 559 FunFam B3 domain-containing protein 187 307 - -
Viun10g02272 559 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 495 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02272 Viun-Chr10 37397401 37399981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02272 185 483 RAV Transcription Factor Family AT2G46870 48.333 4.10e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun10g02272 B3 2.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02272 K09287 - gmx:100781424 682.174