Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02258 ATGGAGGCGTACTCCTCTGGAGAAGAAGTAATTGTAAAGACGAGGAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTTTAGAAGCTTTGAAACTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAAAAGTTTTTCACAAAGTTGGAGAAAGAAGCCCTTGTAAAGGGTGTTCCAATTGGGCAAGCTCTTGATATAGATATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACTAGGATTGGTACCGCAACATTACATAGTGGAGCAAAGGATGGAAAGCTCAATTTAGTTGAATCTTCACATGACAACCAAGCACTGGACTTGGAAAAAGAACCACTTCCGGAGAAATATGATTTAGACGAGGGGCCAACAACAGTAAAGGAAAATAAGGATGACAACTGCTCAAAAGTATTTACAGTTATTCAGGAGGTACCATGTTCTTCTCTATCTTCAGCAAACAGGAGTTCAATATCTGTGTCAGTGCCGTTGGGAAATTCATGCGTATTCAAGGAGATTACAACTTCAGTGAAAGAGGTAATAACTCGAGATGAAAAAACTAAATCATTTCTGACTGTTGAACTTGAAAATGGGAATTTGGAGATCAATGATGGAGAACAGGCTAATGGCACTAGTAAAAACTCCACGTTAGAGAATTCTGATGCTTTACAAATGAAATTGGATCAAAATGAGAAAACAGATGGTCTCGATAGTGCATTAACAATAGATGGGATGCAAGGCAATCAGAATTACCCTAGACATGTAACTGTGCACGTTGTTGACGGGAACCTTGGAACAAGTACTCAAAAGCCATCACAAGATATGCTGTTTCGAGACTGCATGTTTCAGCCAATAGGAGGGGCTAATGGGCAACCAAATCTTTTCACCAAGTCAGCTCCATCGAACACAAGTGAAAGTCAAAATAACACAGCACGATCTTCTGTTCATCAATCATTTCTTCCGTATCCTCCCTTCACACAACACAACCAGGACGATTACCAATCATTTCTTCACATGTCTTCCACATTTTCTAATCTTATTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTCGCTGCTACATTTTGGCCCTATGCAAATCCAGAGACTTCAGCAGATTCTCCTAGGTGCTCTCAAGGAGGTTTCACATCTAGACAAATTGGTTCCCCTCCAAGCGTTGCAACTATTGCAGCTGCTACTGTAGCTGCTGCAACTGCGTGGTGGGCAGCTCATGGACTGCTTCCTTTGTGTGCTCCTCTTCATACTGCTTTTGGCTGTCCTCCTGCATCTGTGACTGCAGTCCCATCAATGAATACTGCTGAAACATCATCTCTAAAGGCGGAACAAGAAAAAAGTACTCTACAAAATCCTCCTCTGCAAGATCAGATGATGCATCCAGAGTACTCGGAAGCTCCTCAAGCTCAACATTCAGCTTCAAAATCACTGGCTGTCATTTCATCAGATTCTGAGAATGGAGATGCCAAGTTAAATACTTCACCAAAGGCTACCGTTCATGAGACGAACGAAACAATTTCTGAGCACCTTGATTCCAACAAAACGAAGGGCCGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGGGAAGGAAGAGCCTGAAACACCCGATGCTAACCATTTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCATTTGCAACCTTACCGATTCTTGGAAAGAGGTCTCTGAAGAGGGGAAACTAGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCTCATGCTTTGAAGAATAAGGACCAAATGGGCATCACCAATGATAACCAGCAAACCATAGATGACAGAAATGAAGACCTTGACGGCAAGAAAGGCAGTTCTAACTATAAACCAATGCAGAAAAACCCGCCATTTGTAGAAAATAACGTGGGACTGTTAACCTTAGGGCTCGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCATGGAGGCCAAGGAAAATAGGGTTGGAGCGAGCAATCAAGGTGAAGAGAAAGGTTGTAAGAGAATACGTTTGGAAGGGGATACTACGACTTGA 2247 0.4366 MEAYSSGEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGKLNLVESSHDNQALDLEKEPLPEKYDLDEGPTTVKENKDDNCSKVFTVIQEVPCSSLSSANRSSISVSVPLGNSCVFKEITTSVKEVITRDEKTKSFLTVELENGNLEINDGEQANGTSKNSTLENSDALQMKLDQNEKTDGLDSALTIDGMQGNQNYPRHVTVHVVDGNLGTSTQKPSQDMLFRDCMFQPIGGANGQPNLFTKSAPSNTSESQNNTARSSVHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANPETSADSPRCSQGGFTSRQIGSPPSVATIAAATVAAATAWWAAHGLLPLCAPLHTAFGCPPASVTAVPSMNTAETSSLKAEQEKSTLQNPPLQDQMMHPEYSEAPQAQHSASKSLAVISSDSENGDAKLNTSPKATVHETNETISEHLDSNKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGKEEPETPDANHLAIEFSNRRRSICNLTDSWKEVSEEGKLAFQALFSREVLPQSFSPPHALKNKDQMGITNDNQQTIDDRNEDLDGKKGSSNYKPMQKNPPFVENNVGLLTLGLGQGKLKTRRTGFKPYKRCSMEAKENRVGASNQGEEKGCKRIRLEGDTTT 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02258 748 MobiDBLite consensus disorder prediction 317 352 - -
Viun10g02258 748 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Viun10g02258 748 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Viun10g02258 748 MobiDBLite consensus disorder prediction 134 160 - -
Viun10g02258 748 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Viun10g02258 748 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Viun10g02258 748 SMART sant 23 71 IPR001005 -
Viun10g02258 748 MobiDBLite consensus disorder prediction 561 576 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 577 595 - -
Viun10g02258 748 Gene3D - 26 73 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 643 687 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 318 352 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 474 496 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 474 597 - -
Viun10g02258 748 CDD SANT 26 69 IPR001005 -
Viun10g02258 748 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Viun10g02258 748 PANTHER SWI/SNF COMPLEX-RELATED 7 635 - -
Viun10g02258 748 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Viun10g02258 748 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Viun10g02258 748 MobiDBLite consensus disorder prediction 721 748 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 541 560 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 506 540 - -
Viun10g02258 748 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02258 Viun-Chr10 37348399 37357871 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g02258 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02258 K12133 - gmx:100101859 1238.79