Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02250 ATGGAGAGGCTCCAAGGACCCCTCAATTCCTGTTTCTTTGGAGACCCCTTGGGAGTGAATTGTTTGGACCAAGTTCTGGTTGACGAAGAAACCCTCAGACTAGAGGAGGAAGAACGGTTTCTGATATCAAGTTTAGAGGACAAGATGCCTTTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTCAAAGAGCCAAACTTTCAAACACTTCTGAGACTGCAGCACATTAAGAAACCGTGGGAGGAAATGACCTATGTTCCAAGAATGGAAGCTCAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGCGTGACGCATGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCGTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACAGAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAGCCACAAGGGAAAGGCGAAAGAGAAAGAGGACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGCCAAATGAATGATCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCAGTGTGTTGTGTAAGCCCCCTCCAACACCATCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAAGCAGTGAGGAAGTGAACTGTGGGGATGAGATGAAGGCAGAAAACAAGTCAGAGACAGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACCTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTAAGGCTAACTATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAACCTACGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 1143 0.4611 MERLQGPLNSCFFGDPLGVNCLDQVLVDEETLRLEEEERFLISSLEDKMPFLQMLQSVESPQFFPFKEPNFQTLLRLQHIKKPWEEMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSCVEKVSYECNQEPQKVSQSCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKPPPTPSSSSPHGYGMRSSSSEEVNCGDEMKAENKSETADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCNLRSASDIAEAVHHIFNFINGS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02250 380 Gene3D - 169 250 IPR036638 GO:0046983
Viun10g02250 380 MobiDBLite consensus disorder prediction 241 280 - -
Viun10g02250 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 229 IPR011598 GO:0046983
Viun10g02250 380 PANTHER TRANSCRIPTION FACTOR FAMA 110 374 IPR044283 GO:0003700|GO:0010052
Viun10g02250 380 SMART finulus 184 235 IPR011598 GO:0046983
Viun10g02250 380 CDD bHLH_AtFAMA_like 181 254 - -
Viun10g02250 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 246 IPR036638 GO:0046983
Viun10g02250 380 Coils Coil 226 246 - -
Viun10g02250 380 MobiDBLite consensus disorder prediction 142 179 - -
Viun10g02250 380 FunFam Basic helix-loop-helix transcription factor 169 244 - -
Viun10g02250 380 Pfam Helix-loop-helix DNA-binding domain 179 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02250 Viun-Chr10 37236257 37239243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02250 43 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.931 6.96e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02250 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02250 - - gmx:100789928 645.195