Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02249 ATGCCTTTCCTTCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTCAAAGAGCCAAACTTTCAAACACTTCTGAGACTGCAGCACATTAAGAAACCGTGGGAGGAAATGACCTATGTTCCAAGAATGGAAGCTCAAGTTCAAGCAGCATTGGAGCTAGAGAGTTGCGTGACGCATGACATGTTGGAGATGCAGTCACCAGTGAAGTCAGAAAGCAATGAGCTCCAACACCCACTTTCGTGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCACAGAAAGTATCACAATCATGCCCCAAATCTCAGCCAGCAGCCACAAGGGAAAGGCGAAAGAGAAAGAGGACAAGGCCAAGCAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGCAACCGGCGGCGCCAAATGAATGATCATCTCAGTGTTCTAAGGTCCCTCATGCCTCCTTCCTATATTCAAAGGGGTGACCAAGCCTCAATAATTGGGGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAGTCCCTTGAGGCACAAAAAAGGATGAGAAAGAATGAAGAGGGAGGTGGTTCTTCTTCCAGTGTGTTGTGTAAGCCCCCTCCAACACCATCATCTTCATCACCACATGGCTATGGAATGAGGTCATCAAGCAGTGAGGAAGTGAACTGTGGGGATGAGATGAAGGCAGAAAACAAGTCAGAGACAGCAGACATAAAAGTGACCTTGATTCAAACCCATGTGAACCTGAAAATTGAGTGCCAAAGGAAACCAGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTAAGGCTAACTATTCTGCACCTCAACATCACCTCCTCAGAGACTTCTGTCCTTTACTCCCTCAATCTCAAGATTGAAGAAGGCTGTAACCTACGTTCAGCAAGTGACATTGCAGAAGCAGTTCATCATATATTCAACTTCATTAATGGTAGCTAG 999 0.4595 MPFLQMLQSVESPQFFPFKEPNFQTLLRLQHIKKPWEEMTYVPRMEAQVQAALELESCVTHDMLEMQSPVKSESNELQHPLSCVEKVSYECNQEPQKVSQSCPKSQPAATRERRKRKRTRPSKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRKNEEGGGSSSSVLCKPPPTPSSSSPHGYGMRSSSSEEVNCGDEMKAENKSETADIKVTLIQTHVNLKIECQRKPGQLIKVIVALEDLRLTILHLNITSSETSVLYSLNLKIEEGCNLRSASDIAEAVHHIFNFINGS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02249 332 PANTHER TRANSCRIPTION FACTOR FAMA 63 326 IPR044283 GO:0003700|GO:0010052
Viun10g02249 332 Gene3D - 120 198 IPR036638 GO:0046983
Viun10g02249 332 FunFam Basic helix-loop-helix transcription factor 121 196 - -
Viun10g02249 332 Coils Coil 178 198 - -
Viun10g02249 332 CDD bHLH_AtFAMA_like 133 206 - -
Viun10g02249 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Viun10g02249 332 SMART finulus 136 187 IPR011598 GO:0046983
Viun10g02249 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 198 IPR036638 GO:0046983
Viun10g02249 332 MobiDBLite consensus disorder prediction 193 232 - -
Viun10g02249 332 MobiDBLite consensus disorder prediction 94 131 - -
Viun10g02249 332 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02249 Viun-Chr10 37236081 37239243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02249 6 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 40.431 1.78e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02249 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02249 - - gmx:100789928 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02249 10 37236081 37239243 Viun10g02249 10 37236081 37239243 ECH