Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02240 ATGGCTGAGTTGAGTAGTACGATGCAAGACCCCGGGACGGGCAACAATGGCGATCGCTCCGCTGAGGTGGTTCGGTGGGAGAGGTTTCTGCCGCGGATGGTGCTTAGAGTCTTGCTTGTAGAAGCTGATCATTCCACTCGACAAATCATCGCTGCGCTTCTTCGCAAATGCAGTTACACAGTTATGGCGGTTCCAGACGGATTAAAGGCATGGGAGTTGTTGAAGATGAAGGCGTCCGAGCTAGATCTCATAATAACTGAAGTGGATCTGCCAGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGAAATTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCTGTAAGCATGGTGTTGAAATGCATGCTAAAAGGGGCAGCTGATTTTCTTATAAAACCTATTAGGAGGAATGAACTAGGGAACTTGTGGCAGCATGTATGGAGAAGGCACGCTAGTAGCACTCCTACTCTAAATACAACATTTTCACCAAAATATCTTAAAACTGCCTCCGAAGACAATTCTGCAAGCAATAAATCTAGTGGTTCCGTGGCCTCCTCTAAGGAAAACAACGAATGCAGTGAAAGATTAAGCGAGGCTCAAGACGTGCCCCAACTGAAAAGTTCTAAACAGAAGAAAATTGATTTGGTGAAGCATGAAAATTTTGCCAGATTTGAAAGTGAATCAACAAAGATGGATAATGAAACAAGAGATAATTCAATTACAATTGTATCAAACACTGCAAGGTGCGACAAAACTTTTAAATCGGCGGATTTAAGGCTAGAACAAGGCCATGGCTGTGCTGATACTGAAATTGAGGTTGAAATCTTAAAATCTGATTTAGGCATAGGAGATTCTAATATTAGTACTGAGTTGCATGGATGCAGTGATGAAGGGGTGAAACCTATTAAAGGAGCTATTGACTTGATTGCAACATTTGGAAATCTTCCAAAGCACCCTGATGAAAACTGTAGTCTTAATGGTGGTAATACAACCATGTTTGATGGTGTTACGCAATTGGAACTTTCTTTAAGAAGTGATTTTCCTGGAAGTTCATGTAAACAAGCAAGCGAAGCAACTGAGGAATCTCAAAGATTGAACCATTCAAACACCTCTGCATTTTCTTGGTATAGTAATAGTAAATTGGTGCACCCTCTTTTTCGAACACCATCAATTACATCCGCAGAAGTAAACAACCCCAGTTGGGATTCTCATGAATCGCATAAATTGTCTCGAACTACTTCTGGAAATTGTTGTCAGTATGATGGCTCAAATAAAAACCTGGAGAATATGATCGGTACAGTCATTGATCAGCATGGACAAGTTAAGCCAAAATTATCAAACAGTCAATGTGGAATGTTACCTGTTTCAGGGGTTATTTCCGATCTTAAGTCCAAGGGACATGGTAATGCTTTCACTTCAGTGTTCTACGCACCATCTGGTCCTCACCCTGTGTGGAGTCCGAAACCAGTCTGCCAGAACGAGAGTTCTCCCTTTCCCACAAGTACCTCCTCCCAGTCCAATCCTGAAAGTCACAACTCTGACCAATATCATGAATGTTCCAATGATGCTACTTGTCTTAATCAAAATGTAAAGGAAGACGCTGATTTGGATCAGGAAAGGCGTGATTCTCCTGCTGCTGATCAGAGTGCTGGTTATAGTTTATGCCATGATGCTTCATATCACGTCAATAGTAGTGCGTATGGAAGCATGGACAGTGGAAATGATGGGCATGCTACTTCAGCTATAGTATCCAAGAACAACCCAGAAGTTTTCAGTGATAGTGTTTGTCATAATTATGACGGGTCTCGAGGCACAGAATCTCATCGCACTAGTCAAAGAGAAGCAGCTCTAACCAAGTTTCGACTGAAGCGGAAAGAGCGATGCTTCGAAAAAAAGGTTCGATATCAAAGCCGGAAAAGACTGGCAGAGCAGCGGCCTCGGGTCAAAGGGCAGTTTGTACGCCAAGTACACAATGATCATCCAGTTGCTGATGCCGGTGGTGATTCATGA 2031 0.4225 MAELSSTMQDPGTGNNGDRSAEVVRWERFLPRMVLRVLLVEADHSTRQIIAALLRKCSYTVMAVPDGLKAWELLKMKASELDLIITEVDLPAISGFALLSLIMEHEICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPIRRNELGNLWQHVWRRHASSTPTLNTTFSPKYLKTASEDNSASNKSSGSVASSKENNECSERLSEAQDVPQLKSSKQKKIDLVKHENFARFESESTKMDNETRDNSITIVSNTARCDKTFKSADLRLEQGHGCADTEIEVEILKSDLGIGDSNISTELHGCSDEGVKPIKGAIDLIATFGNLPKHPDENCSLNGGNTTMFDGVTQLELSLRSDFPGSSCKQASEATEESQRLNHSNTSAFSWYSNSKLVHPLFRTPSITSAEVNNPSWDSHESHKLSRTTSGNCCQYDGSNKNLENMIGTVIDQHGQVKPKLSNSQCGMLPVSGVISDLKSKGHGNAFTSVFYAPSGPHPVWSPKPVCQNESSPFPTSTSSQSNPESHNSDQYHECSNDATCLNQNVKEDADLDQERRDSPAADQSAGYSLCHDASYHVNSSAYGSMDSGNDGHATSAIVSKNNPEVFSDSVCHNYDGSRGTESHRTSQREAALTKFRLKRKERCFEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVADAGGDS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02240 676 CDD psREC_PRR 37 140 - -
Viun10g02240 676 MobiDBLite consensus disorder prediction 176 211 - -
Viun10g02240 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 350 IPR045279 GO:0009736
Viun10g02240 676 Pfam Response regulator receiver domain 37 146 IPR001789 GO:0000160
Viun10g02240 676 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Viun10g02240 676 SUPERFAMILY CheY-like 35 161 IPR011006 -
Viun10g02240 676 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Viun10g02240 676 MobiDBLite consensus disorder prediction 176 217 - -
Viun10g02240 676 MobiDBLite consensus disorder prediction 496 526 - -
Viun10g02240 676 MobiDBLite consensus disorder prediction 493 526 - -
Viun10g02240 676 Gene3D - 33 267 - -
Viun10g02240 676 Pfam CCT motif 620 662 IPR010402 GO:0005515
Viun10g02240 676 SMART REC_2 35 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02240 Viun-Chr10 37189335 37194588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02240 583 664 Response Regulator Gene Family AT5G24470 54.878 1.14e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Viun10g02240 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02240 K12130 - gmx:100791698 981.474