Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02239 ATGTCATTATTTGCATTCCTGTCTGTATTATGTGATGGTTTTGTGGATGAAGAAGATAACGAAAGGCTTGGAAAATCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAGCTGTGATGCAGCATACTTGCTTGACTTGTTCAGGCCATATGGGACCATTCTATCTGTTGAGGTTTGCCGAAATGATGAGACTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTGTATATTCAGCAAGAAATGCAGTTGCTACATTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGGTGAATTCTAAAAGAAGGGGTTTTAATAAAGTGAACTCTTCCACCAAGAGAATCTTATACTATGAATCTTCTCATAAGTTGTATGTTGGCAATCTTCCTAAGACAATGAGACCTGAACAAGTGAGAGATCACTTTAGCAGATTTGGAAATATAGTTGGTGCTAGAGTTATGCTTGATTTTAAACAAGGGAAAAGTCGAGCCTATGCCTTTCTCTCCTTTCAATCTCAGGCGGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAGAGCCTTTAACTGAAGCTTCAGTGTCTGCATAA 660 0.4061 MSLFAFLSVLCDGFVDEEDNERLGKSCEVYVCNLPRSCDAAYLLDLFRPYGTILSVEVCRNDETNESKGCGYVTLGSVYSARNAVATLDGSDVGGREMRVRFSIEVNSKRRGFNKVNSSTKRILYYESSHKLYVGNLPKTMRPEQVRDHFSRFGNIVGARVMLDFKQGKSRAYAFLSFQSQAERDAAMSLNGTEFYGRTLIVKEGVERTEPLTEASVSA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02239 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Viun10g02239 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Viun10g02239 219 PANTHER OS02G0815200 PROTEIN 17 203 - -
Viun10g02239 219 SUPERFAMILY RNA-binding domain, RBD 22 114 IPR035979 GO:0003676
Viun10g02239 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Viun10g02239 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Viun10g02239 219 SUPERFAMILY RNA-binding domain, RBD 127 209 IPR035979 GO:0003676
Viun10g02239 219 SMART rrm1_1 131 203 IPR000504 GO:0003723
Viun10g02239 219 SMART rrm1_1 28 101 IPR000504 GO:0003723
Viun10g02239 219 Gene3D - 15 118 IPR012677 -
Viun10g02239 219 Gene3D - 119 214 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02239 Viun-Chr10 37184149 37186949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02239 16 210 Eukaryotic Initiation Factors Gene Family AT1G22760 30.102 3.81e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02239 - - vun:114165634 438.343