Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02234 ATGGGTGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTCTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAGACTCAGAGGGACACAGTGAGAAGGTATTTTGAGCAGTTCGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCATTGAAAGCAGTTCGAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAGCGTGGTTGGTTTAGAGAAGCACCTGGTTTATTGGCTTCACCTGTTTATCATGACCCTTTCTCTGTTTATCATGACCCTTTCTCTGTTTATCATGACCCTTTCTCTGCATTTTTCCATCAAAATAATGGGCAATACACATTTCCTAACTCAACTTTTGGCAGATATATTCAACCTTCACATGACATGATGTACCCCATGAACTGTTATGGAGTACTTGGAGGGCAACAGTTCTCAACTTACTACCCCTACATTGGGCCACCTGAACCTATAGGATTGGTCCATAACACTTATCCTTTTTCTGCTCAGCATGCACACAATATCGAAGCTCAAGGTTTTGGATTCCATTATCCCCAAATGATGCATTCTCCAGTTATTCCTAGGCACTATGGGTCACCTGGTATCCTTAGATATCCTTCTTCAATGGAAAGACCAACTATTAGTACAGCAAGATTGCATTAA 774 0.4096 MGGGNINSSEHIDTTSTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVALKAVRNPYPIIDGRKTNCNIASIGANKNRRQAPQRGWFREAPGLLASPVYHDPFSVYHDPFSVYHDPFSAFFHQNNGQYTFPNSTFGRYIQPSHDMMYPMNCYGVLGGQQFSTYYPYIGPPEPIGLVHNTYPFSAQHAHNIEAQGFGFHYPQMMHSPVIPRHYGSPGILRYPSSMERPTISTARLH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02234 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Viun10g02234 257 SMART rrm1_1 18 90 IPR000504 GO:0003723
Viun10g02234 257 CDD RRM_RBM24_RBM38_like 17 92 - -
Viun10g02234 257 Gene3D - 5 108 IPR012677 -
Viun10g02234 257 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Viun10g02234 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Viun10g02234 257 PANTHER BOULE-RELATED 11 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02234 Viun-Chr10 37148878 37150722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02234 6 93 C2H2 Transcription Factor Family AT2G19380 40.909 7.13e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02234 - - gmx:100786226 343.199