Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02232 ATGGGTGGTGGTAACATCAATTCAAGTGAACACATTGATACAACTTCTACCAAAATCTTTGTTGGAGGTTTAGCTTGGGAGACTCAGAGGGACACAGTGAGAAGGTATTTTGAGCAGTTCGGAGAGATTTTAGAGGCTGTTGTTATCACAGATAAGAACACTGGAAGATCCAAGGGTTATGGTTTTATCACATTCAAGGATCCTGAGGTAGCATTGAAAGCAGTTCGAAACCCATATCCAATAATTGATGGACGGAAGACAAATTGCAATATTGCATCTATTGGTGCAAACAAGAATCGCAGACAGGCTCCACAGCGTGGTTGGTTTAGAGAAGCACCTGGTTTATTGGCTTCACCTGTTTATCATGACCCTTTCTCTGTTTATCATGACCCTTTCTCTGTTTATCATGACCCTTTCTCTGCATTTTTCCATCAAAATAATGGGCAATACACATTTCCTAACTCAACTTTTGGCAGATATATTCAACCTTCACATGACATGATGTACCCCATGAACTGTTATGGAGTACTTGGAGGGCAACAGTTCTCAACTTACTACCCCTACATTGGGCCACCTGAACCTATAGGATTGGTCCATAACACTTATCCTTTTTCTGCTCAGCATGCACACAATATCGAAGCTCAAGGTTTTGGATTCCATTATCCCCAAATGATGCATTCTCCAGTTATTCCTAGGCACTATGGGTCACCTGGTATCCTTAGATATCCTTCTTCAATGGAAAGACCAACTATTAGTACAGTTACCAGAACTACCAGAACTACAACAAAAAGAGAGACACCAAGAACAATTGCGGATGCTTCACAAACCAGTGAAATAACTTCTGAACAACATTCTTCAGCTGAATCTTCACATAAATAA 879 0.405 MGGGNINSSEHIDTTSTKIFVGGLAWETQRDTVRRYFEQFGEILEAVVITDKNTGRSKGYGFITFKDPEVALKAVRNPYPIIDGRKTNCNIASIGANKNRRQAPQRGWFREAPGLLASPVYHDPFSVYHDPFSVYHDPFSAFFHQNNGQYTFPNSTFGRYIQPSHDMMYPMNCYGVLGGQQFSTYYPYIGPPEPIGLVHNTYPFSAQHAHNIEAQGFGFHYPQMMHSPVIPRHYGSPGILRYPSSMERPTISTVTRTTRTTTKRETPRTIADASQTSEITSEQHSSAESSHK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02232 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Viun10g02232 292 PANTHER BOULE-RELATED 11 252 - -
Viun10g02232 292 SMART rrm1_1 18 90 IPR000504 GO:0003723
Viun10g02232 292 MobiDBLite consensus disorder prediction 267 284 - -
Viun10g02232 292 CDD RRM_RBM24_RBM38_like 17 92 - -
Viun10g02232 292 Gene3D - 5 108 IPR012677 -
Viun10g02232 292 MobiDBLite consensus disorder prediction 252 292 - -
Viun10g02232 292 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Viun10g02232 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02232 Viun-Chr10 37148878 37150904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02232 6 93 C2H2 Transcription Factor Family AT2G19380 40.909 9.75e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02232 - - gmx:100782484 342.043