Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02227 ATGCCGGAAAACATGAGCATATCTGTCAATGGACAATCTCAAGTCCCACCTGGCTTCAGGTTCCACCCCACCGAGGAGGAGCTTCTTCAGTACTACCTCAGGAAGAAGGTCTCTTACGAGAAGATTGACCTCGATGTTATTCGTGATGTTGATCTCAACAAGCTCGAGCCATGGGATATTCAAGAGAAATGCAAAATAGGAACCACTCCGCAGAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCCACAGGAACCCGCACCAACCGCGCCACCGCTGCCGGATTCTGGAAGGCCACCGGCCGCGACAAAGTCATTTACAGCAACGGAAAGAGGATTGGAATGAGAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCTGACTGGATCATGCACGAATACAGACTCGACGACAACACCACCAGCGACACCAATATCGTGTCGAATGTGATGGGGGACGGTGGTCAGGAGGAAGGGTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACAACCTGAAAACCCTAGACAGCCCCTTAGGTTCGGGAGAAGGTAGAAGGAGCCAGTTGTTCGAGTCGTGCGACGAGGGGGCTTTGGAGCAAATACTTCAGCAAATGGGGAGGGGTTGCAAGGAAGAGAGCAGCTACGAGGGGAGCTACAGCTATGGAAGGTTGGGGAGGGGTTACGAGACAGGTGTGAACAACGACAGGTTCATGAAGCTGCCGAGCCTAGAGAGCCCAAAATCCACAAGCATGGAGAGTCAGCAGAACAACCTCAACAGCAGCAGCAACTGTAATAATGGTGATAATAACAACGAGCAGAACAATAATGGGTACCATCCCATTATTCCAGCAGACATGGGGACGGACAATGAAGGGTCATTCGCAACCCACCAGGTGAGTGGTGGTGACCCCAACATGGTTCACCCAATGGAGCCATCTTCAGGTGGAGGAGGCCTCACCAACTGGGCTGCGCTGGACCGTTTGGTTGCCTCTCAGCTCAACGGCCAAACCGAAGCCTCTAGGCACTTCGCATGCTTCAACGACCCCACCCTCGCCTACTGCACCCCCCACCATGATCTCCCATTGCCCACCCTCCGATCATCATCAAATCCCTCATCAACCCCCACCCTCACCAGACCCTCCCCTACACCCGCATACATCAACCCCGCACACGACTTCGCCAGCGAGATTGACCTCTGGAACTTCACCCGCTCCACCTCCGAACCTCTCTGCCACGTCTCCAACACCTCACTCTAG 1278 0.5321 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTSDTNIVSNVMGDGGQEEGWVVCRIFKKKNNLKTLDSPLGSGEGRRSQLFESCDEGALEQILQQMGRGCKEESSYEGSYSYGRLGRGYETGVNNDRFMKLPSLESPKSTSMESQQNNLNSSSNCNNGDNNNEQNNNGYHPIIPADMGTDNEGSFATHQVSGGDPNMVHPMEPSSGGGGLTNWAALDRLVASQLNGQTEASRHFACFNDPTLAYCTPHHDLPLPTLRSSSNPSSTPTLTRPSPTPAYINPAHDFASEIDLWNFTRSTSEPLCHVSNTSL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02227 425 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Viun10g02227 425 MobiDBLite consensus disorder prediction 371 391 - -
Viun10g02227 425 MobiDBLite consensus disorder prediction 371 390 - -
Viun10g02227 425 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Viun10g02227 425 MobiDBLite consensus disorder prediction 250 285 - -
Viun10g02227 425 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Viun10g02227 425 FunFam NAC domain-containing protein 24 179 - -
Viun10g02227 425 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 272 - -
Viun10g02227 425 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Viun10g02227 425 MobiDBLite consensus disorder prediction 245 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02227 Viun-Chr10 37065813 37067838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02227 1 424 NAC Transcription Factor Family AT2G46770 53.288 3.75e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g02227 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02227 - - gmx:100793308 658.292