Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02224 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATACAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAAGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGACGGTTCAGGCCTCCACCTACTTCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCTCCTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTATGAACTACTATAATGTCTATGGAGTTCAACAATTTTCAGCTTACTACCCTTCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATTTATCCCTATTATGGTCAATATGCACAGAGTATTCAGGCTCAAGGTTTTGGGGTTCAATACCCTCAAATGCCACAGTTTCCATTTTTGCCTCACCCTTATGGCTCCACTGGGATATTGTCTTATCCTTCTTCAGTATCAGTGCCAACTACTACTGCAGTTTCAGTAACAGGAACTGCTACCACAACTATAACACCAACAACATCAACAGGTATGACAGCAACAGTGGCTGGTAGTTCACAAGCTTCACAAACAGCTTCTGAACAAAATTCTACATCTTCAAAGATGCAGAACATGCAAGGCTAA 873 0.425 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGRFRPPPTSYHGSSSTATFSHQPPRQYTFPYSAYGYSGYSQDTLYPMNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPYYGQYAQSIQAQGFGVQYPQMPQFPFLPHPYGSTGILSYPSSVSVPTTTAVSVTGTATTTITPTTSTGMTATVAGSSQASQTASEQNSTSSKMQNMQG 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02224 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Viun10g02224 290 MobiDBLite consensus disorder prediction 257 290 - -
Viun10g02224 290 PANTHER BOULE-RELATED 9 284 - -
Viun10g02224 290 SUPERFAMILY RNA-binding domain, RBD 12 125 IPR035979 GO:0003676
Viun10g02224 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Viun10g02224 290 CDD RRM_RBM24_RBM38_like 24 99 - -
Viun10g02224 290 SMART rrm1_1 25 97 IPR000504 GO:0003723
Viun10g02224 290 Gene3D - 1 114 IPR012677 -
Viun10g02224 290 FunFam RNA-binding protein 24-B isoform X1 11 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02224 Viun-Chr10 37033001 37035559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02224 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 3.10e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02224 - - pvu:PHAVU_010G118600g 487.263