Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02223 ATGTCTCAACAAAAGCAAGCTCAGATGGTAGGTGGTAACAACCAGGAGCAATACAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGAAGGTATTTTGAGCAATTTGGAGAGATCTTGGAGGCTGTTGTGATCACTGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAAGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGAAGAAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGACCACCAACTTTTCAGCATGGTCCCTTTCCTTACATTGTTCTTCCTTTTTTTCTCATGCTTTACCATTTTTTTCATAAAGTGCAGGACGGTTCAGGCCTCCACCTACTTCTTATCATGGTTCTTCATCTACTGCTACATTTTCCCATCAACCTCCTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTATGGTGTAAACTCTTGCAGAACTACTATAATGTCTATGGAGTTCAACAATTTTCAGCTTACTACCCTTCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATTTATCCCTATTATGGTCAATATGCACAGAGTATTCAGGCTCAAGGTTTTGGGGTTCAATACCCTCAAATGCCACAGTTTCCATTTTTGCCTCACCCTTATGGCTCCACTGGGATATTGTCTTATCCTTCTTCAGTATCAGTGCCAACTACTACTGCAGTTTCAGTAACAGGAACTGCTACCACAACTATAACACCAACAACATCAACAGGTATGACAGCAACAGTGGCTGGTAGTTCACAAGCTTCACAAACAGCTTCTGAACAAAATTCTACATCTTCAAAGATGCAGAACATGCAAGGCTAA 954 0.4193 MSQQKQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGPFPYIVLPFFLMLYHFFHKVQDGSGLHLLLIMVLHLLLHFPINLLGNTHFLIQLTDILDIHKTHCILWCKLLQNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPYYGQYAQSIQAQGFGVQYPQMPQFPFLPHPYGSTGILSYPSSVSVPTTTAVSVTGTATTTITPTTSTGMTATVAGSSQASQTASEQNSTSSKMQNMQG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02223 317 Gene3D - 1 110 IPR012677 -
Viun10g02223 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 83 IPR000504 GO:0003723
Viun10g02223 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Viun10g02223 317 PANTHER BOULE-RELATED 9 311 - -
Viun10g02223 317 CDD RRM_RBM24_RBM38_like 24 99 - -
Viun10g02223 317 SMART rrm1_1 25 97 IPR000504 GO:0003723
Viun10g02223 317 MobiDBLite consensus disorder prediction 284 317 - -
Viun10g02223 317 FunFam RNA-binding protein 24-B isoform X1 11 116 - -
Viun10g02223 317 SUPERFAMILY RNA-binding domain, RBD 12 105 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02223 Viun-Chr10 37033001 37035560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02223 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.31e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02223 - - vun:114166117 570.852