Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02220 ATGGGGAAGAAGGGAAGTGGTAGTTCGTGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCAAGAAGGAGCGAACACCAACAACAACAACACTCAACAAAAGTCGAAGCATGATGTGGCGGCAGCAGCTGGTGGGGGTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCGGTGGCAGTGGCCACCGCAGAAGCCGCCATGGCGACCGCTCAGGCGGCGGTGGAGGTGGCAAGGCTGACCAAACCTGCTAGCCATGCAAGGGAGCATTATGCTTCTGTTGTGATCCAAACAGCTTTCAGAGGGTATCTGGCCAGAAGAGCACTTCGTGCACTGAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTCGGAAGCAGGCAAAGATGACCCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACCTTCAGTGACACCGCCAGCGTTTGGGACTCGCGGTATCTTCACGATATTTCAGATAGGAAATCAGTGTCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCTCACACGGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCAGCAATGAAGAGAGATAAGACCCTGTCCCAGGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCGATTGGAAACGAAGACGAGTTGGAAGAGAGACCAAAATGGCTAGACCGGTGGATGGCGACGAAGCCATGGGAGAACAGAGGAAGAGCTTCAACAGATCAGAGAGACCCCATTAAGACAGTGGAGATCGACACCTCTCAACCTTATTCATATCTGGGAACCAATTACAGAAGATCACATCCAAATTATCAATACAACCCAAACCACCATCAACCACAAAGACACTCCATTGCTTCTCCACTCCACAGATCTCACCAAAATGGATCCATTCACCAGTCCCCGGCAACCCCTTCTCCCGCAAAATCAAGACCCATCCAAGTCCGGTCAGCAAGCCCTCGTTGCATCAGAGAAGACAGAAACTACCCCACCTCACAAACACCAAGCTTGAGGTCCAATTACCATTACACAGGAAACTTGTACCAAAATGGAAGGGGTGTTGGATCTGGAACTAGTAGTAACGGTGCTGCTACATTGCCGAATTACATGGCGGCGACGGAGTCTGCAAAGGCTCGAATCCGGTCACAGAGCGCGCCAAGGCAGAGGCCATCGACACCGGAGAGGGACAGGGTTGGATCGGCAAAGAAAAGGCTTTCTTTTCCTGCTCCAGACCCTTATAGCGTGGGAGTGAGTTATGGAAACTACGGGCACAGTTTGAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTCGGGTTGGAGCAGCAATCAAATTACTCCTCTTGCTGCACGGAAAGTGTTGGCGGTGGTGAGGTTTCTCCGTCTTCAACCGGCGACCTTAGGAGGTGGTTGAGATGA 1635 0.5052 MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSQEGANTNNNNTQQKSKHDVAAAAGGGSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLTKPASHAREHYASVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLHDISDRKSVSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSIHQSPATPSPAKSRPIQVRSASPRCIREDRNYPTSQTPSLRSNYHYTGNLYQNGRGVGSGTSSNGAATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESVGGGEVSPSSTGDLRRWLR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02220 544 MobiDBLite consensus disorder prediction 19 49 - -
Viun10g02220 544 Pfam IQ calmodulin-binding motif 131 149 IPR000048 GO:0005515
Viun10g02220 544 Pfam IQ calmodulin-binding motif 155 171 IPR000048 GO:0005515
Viun10g02220 544 PANTHER IQ-DOMAIN 5-RELATED 1 480 - -
Viun10g02220 544 MobiDBLite consensus disorder prediction 1 91 - -
Viun10g02220 544 FunFam IQ-domain 11 127 178 - -
Viun10g02220 544 MobiDBLite consensus disorder prediction 503 544 - -
Viun10g02220 544 Gene3D - 125 187 - -
Viun10g02220 544 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Viun10g02220 544 MobiDBLite consensus disorder prediction 58 76 - -
Viun10g02220 544 SMART iq_5 127 149 IPR000048 GO:0005515
Viun10g02220 544 SMART iq_5 150 171 IPR000048 GO:0005515
Viun10g02220 544 MobiDBLite consensus disorder prediction 445 481 - -
Viun10g02220 544 MobiDBLite consensus disorder prediction 503 532 - -
Viun10g02220 544 MobiDBLite consensus disorder prediction 397 415 - -
Viun10g02220 544 Pfam Protein of unknown function (DUF4005) 390 493 IPR025064 -
Viun10g02220 544 MobiDBLite consensus disorder prediction 304 415 - -
Viun10g02220 544 MobiDBLite consensus disorder prediction 304 319 - -
Viun10g02220 544 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Viun10g02220 544 MobiDBLite consensus disorder prediction 320 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02220 Viun-Chr10 37023448 37026461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02220 10 544 IQD Protein Family AT4G00820 58.484 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02220 - - gmx:100786729 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02220 10 37023448 37026461 Viun10g02220 10 37023448 37026461 ECH