Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02210 ATGGAGGAACTCATCATCTCCCCTTCCTCATCTTCTTCTCTGGTCACTCTGCCCCAACAAAACCCAACACCACCCATTCAACAAAAACTCCAATTTCTCCTCCAAACCCAACCCGATTGGTGGGTCTACGCCATTTTCTGGCAGGCTTCACACGACGACAATGGCAACCTTTACCTCTCCTTCGGAGAAGGTCATTTCCAAGGCACCAAAGAAACCTCCCCAAAATTCTCAAACCCCGTTCCCACCAAGAAGTTCACCAAAACCCCCACAACAGAAAACATCAACGATGCCGAGTGGTTCTACGTCATGTCGTTGACTCGAACGTTTCCCGTCAACAATTCTTCTTCTTCGGCCTCTACCGCTCCTTCTTCACTCCTTGGCAAGTCTTTTGCTCTGGGCTCTGTGCTGTGGCTCAATAGCAAGCACGAGCTCCAATACTACAAGTGCGACAGATCAAACGACGCCCAGTTGCACGGGATCCAAACGTTGATCTCCATCCCCACACAAAACGGCGTCGTCGAAATGGGATCCTACGACAGCATCAAACAAAACTGGAACCTCGTCCAACACGTCAAGTCTCTCTTCCAACCCCTCCCAGATCCGCTTCCCGTTCAAATCCTCAACGACCACACCATCTCCTTCGCGGACATCGGCGTCGCCGCCGGAATCCAAGAAACCAAAAAGCGAAAACAAACCCAATCACCACCACCCAACAACAACCAAAAAGACAGCTACGTAGACTCCGAACACTCTGATTCGGACTGTCCAACGCTGCCAACCACCTCCACCCCGACCGCCTCGGAGCCCAAAAGACGAGGCAGAAAACCCGTTCTCGGCCGCGAAACGCCAATGAACCACGTGGAGGCTGAGCGGCAGAGAAGAGAAAAGCTCAACCACCGCTTCTACGCGCTACGCGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCGTTGTTGTCCGACGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCATCAACAGAGAGAGGGTAATAAAAGAGTGAAGACAGAAATGATGGATACCATGGATAATCAGAGCACCGCCACTACCTCCACCATCGTAGACCAAGGCAGGCCTGGTCCCGGAGGCCCAGGCCCCTTCGGTCTCGAGATCGATGTGAAGATCGTGGGGCCAGATGCCATGGTTAGGGTGCAATCGGAAAATGCGAACCACCCCGGGGCGAGGCTAATGGGTGCACTGAGAGACCTAGAGTTCCAGGTTCATCATGCTAGCATGTCGTGCGTTAACGATCTCATGCTTCAAGACGTGGTGATCAATGTCCCTGATGGAATGAGGAACGAAGAGGGTCTTAAATCTGCCATTCTCATGAGGTTGGATCAGTGA 1389 0.5241 MEELIISPSSSSSLVTLPQQNPTPPIQQKLQFLLQTQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFSNPVPTKKFTKTPTTENINDAEWFYVMSLTRTFPVNNSSSSASTAPSSLLGKSFALGSVLWLNSKHELQYYKCDRSNDAQLHGIQTLISIPTQNGVVEMGSYDSIKQNWNLVQHVKSLFQPLPDPLPVQILNDHTISFADIGVAAGIQETKKRKQTQSPPPNNNQKDSYVDSEHSDSDCPTLPTTSTPTASEPKRRGRKPVLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESHQQREGNKRVKTEMMDTMDNQSTATTSTIVDQGRPGPGGPGPFGLEIDVKIVGPDAMVRVQSENANHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPDGMRNEEGLKSAILMRLDQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02210 462 Coils Coil 459 462 - -
Viun10g02210 462 MobiDBLite consensus disorder prediction 268 293 - -
Viun10g02210 462 SMART finulus 287 336 IPR011598 GO:0046983
Viun10g02210 462 CDD bHLH_AtAIB_like 279 355 - -
Viun10g02210 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 343 IPR036638 GO:0046983
Viun10g02210 462 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 195 IPR025610 -
Viun10g02210 462 MobiDBLite consensus disorder prediction 1 21 - -
Viun10g02210 462 Pfam Helix-loop-helix DNA-binding domain 285 330 IPR011598 GO:0046983
Viun10g02210 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Viun10g02210 462 Gene3D - 279 346 IPR036638 GO:0046983
Viun10g02210 462 MobiDBLite consensus disorder prediction 226 293 - -
Viun10g02210 462 MobiDBLite consensus disorder prediction 226 244 - -
Viun10g02210 462 MobiDBLite consensus disorder prediction 251 267 - -
Viun10g02210 462 PANTHER MYC 22 459 IPR045084 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02210 Viun-Chr10 36933701 36935653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02210 22 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.865 2.41e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02210 bHLH-MYC_N 7.9e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02210 - K13422 var:108347008 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02210 10 36933701 36935653 Viun10g02210 10 36933701 36935653 ECH