Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02208 ATGGGCATGGGGGAGAAGAGTCCGAGGAGTTTCCAATTGCACCATCGTGATGGGAAGAAGCAGGATTTCAGAGGGGTGCCAAAAGGGTGCATGGCGATCAAAGTTGGTCAAGGAGAAGAGCAACAAAGGTTCGTGGTTCCTGTGATGTACATCAACCACCCTCTCTTCATGCAGCTTCTGAAGGAGGCAGAGGAAGAATACGGTTTCGACCAGAAGGGAACCATAACCATCCCTTGCCATGTTGAGGAATTCAGAAACGTTCGAGGCTTGATTGATAGGGACAAGTCCCTTCACCACCACCACCACAACCATGTTGGTTGCTTTGGCTTCTGA 333 0.5015 MGMGEKSPRSFQLHHRDGKKQDFRGVPKGCMAIKVGQGEEQQRFVVPVMYINHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVRGLIDRDKSLHHHHHNHVGCFGF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02208 110 Pfam Auxin responsive protein 22 87 IPR003676 GO:0009733
Viun10g02208 110 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 19 86 IPR003676 GO:0009733
Viun10g02208 110 MobiDBLite consensus disorder prediction 9 24 - -
Viun10g02208 110 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02208 Viun-Chr10 36900326 36901255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02208 26 103 Calmodulin-binding Proteins AT5G20810 45.570 4.15e-18 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02208 K14488 - gmx:111188139 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01829 6 25428310 25429185 Viun10g02208 10 36900326 36901255 PCT