Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02206 ATGGAATATACTTATTCAGCAGAGGGTGCAGAGGCAGAAACTTACACCAGTAGCAGCACCACCCCATCAAGTGCCATGAGATCATCAAAGAAGAAAGCCAACAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAAACCATGTTTGAGACAGAGTCCAGGCTTGAGCCTAGAAAGAAGTTGCAGCTCGCAAGAGACCTTGGATTGCAGCCACGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTCGAGAGAGACTATGGTATACTACAATCCAATTACAACAGTTTGGCCTCACGCTTTGAAGCTCTCAAGAAGGAAAAACAAACATTACTAATTCAGTTGCAGAAGCTGAATCATCTAATGCAGAAGCCATTGGAGGGAGGTCAGAGTAGGACACAAGTTGAAGCTGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGGAGGAGGAAAAGCCAAGCCCATCAGTGGAAAGATCAGAACATGTGCACGGTGTTCTGTCTGATGATGATGGTAGCATAAAGGTGGAAGATTTTGGCCTAGAAGATGAACATGGTCTCTTGAACTTTGGGGAGCATGCTGATGACTCCTTGACTTCACCAGAAGATTGGAGTGCTTTTGAATCCGATGGTCTCTTAGGCCAAACGACCGGTGATTACCAATGGTGGGATTTCTGGTCCTGA 732 0.4495 MEYTYSAEGAEAETYTSSSTTPSSAMRSSKKKANNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEGGQSRTQVEAANSMDSESENGGTMKCEEEEKPSPSVERSEHVHGVLSDDDGSIKVEDFGLEDEHGLLNFGEHADDSLTSPEDWSAFESDGLLGQTTGDYQWWDFWS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02206 243 FunFam Homeobox-leucine zipper protein ATHB-7 18 91 - -
Viun10g02206 243 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Viun10g02206 243 MobiDBLite consensus disorder prediction 10 31 - -
Viun10g02206 243 Pfam Homeodomain 38 89 IPR001356 GO:0003677
Viun10g02206 243 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Viun10g02206 243 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Viun10g02206 243 Coils Coil 111 131 - -
Viun10g02206 243 SUPERFAMILY Homeodomain-like 16 93 IPR009057 -
Viun10g02206 243 MobiDBLite consensus disorder prediction 135 190 - -
Viun10g02206 243 MobiDBLite consensus disorder prediction 158 190 - -
Viun10g02206 243 SMART HOX_1 34 95 IPR001356 GO:0003677
Viun10g02206 243 MobiDBLite consensus disorder prediction 136 157 - -
Viun10g02206 243 Gene3D - 19 100 - -
Viun10g02206 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 174 IPR045224 GO:0003700
Viun10g02206 243 MobiDBLite consensus disorder prediction 1 45 - -
Viun10g02206 243 CDD homeodomain 38 92 IPR001356 GO:0003677
Viun10g02206 243 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Viun10g02206 243 Pfam Homeobox associated leucine zipper 91 133 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02206 Viun-Chr10 36849995 36851156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02206 19 243 Homeobox Transcription Factor Family AT2G46680 49.798 1.40e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun10g02206 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02206 K09338 - gmx:100797862 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02206 10 36849995 36851156 Viun10g02206 10 36849995 36851156 ECH
Viun6g01827 6 25414402 25415675 Viun10g02206 10 36849995 36851156 PCT