Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02198 ATGTGGATTTCGGAATCTCGGATCATTGTCGTCATGAGTGGTTACAACCCCATATTCCTCGTAATCCTCAGTTTGGTCATAGGTTTCGTAATTCGATGGTTGCTGTTCAAGACGGGATTGATACATAGCATAAGAAAAGTATTGAGAAGGGTGCAGGATTGGTTCCACGTCTACCAGTTCCTCAAAGTCCCCGAATTCAACGAAGCCATGCAACGGAATCACTTTCACCGCAAAGTTTCTCTCTATTTGCATTCTCTTCCTTCATTAGAAGACGCTGACTTCACCAATCTCGTTTCCGGTCACGACCAGAACGACATCGTTTTGCGCCTCGACCCAAACCAAACCATCGAGGACCATTTTCTCGGGGCCACACTCTTCTGGTTCGAACAAAAAACCCAACCGGACCGGATTTCATCCTTCGTTCTCAAAATCAGAAAAACCGATAAACGACGAATCCTCCGCCAGTACCTCCGTCATATCAATACCGTCGCCGACGAGATGGAGAGCCAAAGGAAACGCCATTTGCGGTTGTTCATGAACGTCGCGGCCGGCGAAGGCGGCAGGGGAGAAACGCGGTGGAGATCAGTTCCGTTCACTCATCCAGCGACTTTTGAAACGATAGCGATGGAGAAGGATCTCAAGAACAGAATCAAATCTGATATCGAATCGTTTCTCAAAGCGAAGCAATACTACCGTAAACTCGGCCGCGCGTGGAAGCGGAGCTTCCTATTGTACGGTGCCTCCGGCACCGGGAAATCGAGCTTCGTCGCTGCGATGGCGAACTTTCTCCGCTACGACGTGTACGACGTGGACCTCTCGAAGATTCGTTGCGATTCGGATCTTAAGTTTCTCCTAATGGAAACGACGGCGAAGTCGATCGTCGTGATAGAGGATCTCGACCGATTTCTCGAACCGGAAAAGGAATCTGCGGTTACGGTGAGGGGAATCCAGAGCTTCATGGACGGGATTCTGAGCGCGTGTTGCGGTGAGGAGAGGGTGATGGTGTTCACGATGAACAGCAAGCAGTGGGTGGACCCGAACTTGATGCGGCCGGGTCGGGTCGACGTGCACATCCACTTTCCGGTTTGCGATTTCTCTGCATTCAAGACGCTTGCGAGCAGCTACCTCGGCGTGAGGGAGCACAAGCTGTTCGCGCAGGTGGAGGATATTTTCCGGCACGGCGCGAGTCTCAGCCCCGCCGAGATCAGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATAAAATCGGTAATCGGGGCGCTCCAATTGGACGGCGATGGGAGAAAGTACGCGGAGATGATTGGACGGCAGATAGGGGTTGATGACGTGGACGTACAGTCCTTTGGTGGGGACGAGTTATCTACGGTTAAAGATTCGCGGAAGTTTTACGGTTTCTTCAGAAAACGGAACGGCAGAAGAACCAACTACCCCAAAATCTAA 1449 0.5183 MWISESRIIVVMSGYNPIFLVILSLVIGFVIRWLLFKTGLIHSIRKVLRRVQDWFHVYQFLKVPEFNEAMQRNHFHRKVSLYLHSLPSLEDADFTNLVSGHDQNDIVLRLDPNQTIEDHFLGATLFWFEQKTQPDRISSFVLKIRKTDKRRILRQYLRHINTVADEMESQRKRHLRLFMNVAAGEGGRGETRWRSVPFTHPATFETIAMEKDLKNRIKSDIESFLKAKQYYRKLGRAWKRSFLLYGASGTGKSSFVAAMANFLRYDVYDVDLSKIRCDSDLKFLLMETTAKSIVVIEDLDRFLEPEKESAVTVRGIQSFMDGILSACCGEERVMVFTMNSKQWVDPNLMRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVEDIFRHGASLSPAEISELMIANRNSPSRAIKSVIGALQLDGDGRKYAEMIGRQIGVDDVDVQSFGGDELSTVKDSRKFYGFFRKRNGRRTNYPKI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02198 482 Pfam Domain associated at C-terminal with AAA 41 127 IPR025753 -
Viun10g02198 482 Pfam ATPase family associated with various cellular activities (AAA) 243 361 IPR003959 GO:0005524|GO:0016887
Viun10g02198 482 SMART AAA_5 238 364 IPR003593 GO:0016887
Viun10g02198 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 419 IPR027417 -
Viun10g02198 482 Gene3D - 194 362 IPR027417 -
Viun10g02198 482 PANTHER BCS1 AAA-TYPE ATPASE 35 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02198 Viun-Chr10 36737210 36739258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02198 196 435 Miscellaneous Gene Families AT5G53170 25.391 2.69e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02198 - K08900 gmx:100787809 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02198 10 36737210 36739258 Viun10g02198 10 36737210 36739258 ECH
Viun6g01823 6 25392036 25394145 Viun10g02198 10 36737210 36739258 PCT