Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02195 ATGATGGTTGTAGATTTTCTATCTTCTGGTTCTACTGGAACTGCCATTTCTCAAACTGTAGAGACCATTGCTGAGTTCATAGTTACTGCTAAAGATGTTCTTGTGAAAAAGGATAGTTTTAATGAACTTGGTGCTTACATGGAAAGAATTAAGCCTATCTTGGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACAAGGCCATTGAGACCATGAACAAAGAAATCAAAGATGCAAAGCTACTAGCTCTAGAGTGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAACTGCAGGTCCATTGCTAAGAAGATAGAGGATCACACAAAACAGCTGAGTTGGGCACTTAGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGAAATCTGGATTTAAAGCAGCTCTAGATGAAGAAGCGATTTTAGAGAAAATTGACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCCATGCAAACAAAATGCTACTTCTCATAGCTGAAGCTGTTGGGATTAGGAATGAGAGGTCAACAATAAAGTTGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCCAGGGATAGGAAGGAGTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAGGGAAAAGGAACTCAGATACTTTGCAAAACGCCAATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAAGATGTTATGGTGGATCCTGTTGAAATTTCATCTGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCTTTGACCTTGATTCCCCTGGACACATCAGTTTTGAGACCTAACAAAATGTTGAAAAAATCCATACAAGAGTGGAAGGACAGAAATACAATGATTACAATTGCTACATTGAAAGAAAAAATTCTGTCTGGAAATGATGAGGAAGTGCTGCATGATCTGCAAATTGTTCAGAATTTGTGTGAAGAAAAAGAACAACACAGGGAATGGGTTATTCTGGAGGGTTACATCCTAACTCTCATTCAATCTCTATCAAGAAACCGTGATATAAGAAGACATTCTCTTTCCATTCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACCGCAGATGGTGCAATTGAATCAATTGTTCGGTCTCTTGGACGTAATACAGTGGAAAGGAAGTTAGCAGTAGCGTTGCTGTTTGAATTGTCCAAATATGATTTGGCACTAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCGACGGAGCTATTGGAGAATCTGTCATACTCTGATCAGAATGTTATTCAGATGGCAAAAGTAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTTAAGATGATTATGGCCAAACATTTAGCAGAAATGGACTTAACTGAACATAACAGAGAGGCCTTGTTTGATGGTGGTGTACTGGCTCCTCTTCTTCTCATGTTCTCACACAATGATCTTCAGGTGAAAACAGTTGCTATCAAAGCTCTTAAGAATTTATCCAATTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGAGCAGCACGGCCACTACTTAACCTTCTTTTCAACCAAAGCATATACACTGCAAGTTTGTGGGAAGATCTAGCAACCATAATCGTGCAACTTGCTGCATCAACTATCTCTCAGGACTCTCAAACACCTGTTTTATTACTAGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAATGTCTCAGAGCCTGTTGTGCAACAGAACATTATCCAAACCTTTTATGCCTTGTGTCAAACGCCCTCGGCTTCGTGTATCAGAACCAAACTGAAAGAGTTACCAGCTGTTCCAAAATTGGTTGAACTGTGCGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGAGCGTGAACCAGAGATGCATCAATACACTACTCCGGATCATAAAATCTTCATCTGATGATGAGGAAATACTTTCTGCCATGGGAATTATATGCTATCTTCCAGAAACTGACCTGATAACTCAATGGCTTCTGGATGCTGGAGCACTGGAAATCATTAAAAGTAGTGTCCAAGTTGGGAAAGACAGGGATCATCAGAGGAGAACTTTAGTTGAGAACGCCATTGGTGCCCTTTGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGAAACCACATTAACAAAACAACGTGTGGCACAGTGTCTTGCTCAATTTTCTAGAAGCTCATTTGTGCTAAGCAGGCCAATACCAAAGCGCAAAGGACTATGGTGCTTCTCAGCTCGTGCTGATATTGGCTGCATGGTTCATGGTGGAATATGCTCAGTCAAATCATCATTTTGTCTCTTGGAGGCCAATGCAGTGGGACCACTCACAAGAACTCTTGAAGAATCTGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTTTTAACATTGATAGAAGGTGAAAGACTGCAACATGGTAGTAAAGTGCTTGCAGATGCAAATGCCATACCATTGATAATCAAATATCTTGGTTCACACTCCCCTGGCTTGCTAGAGAAATCTCTCAATGCTTTGGAAAGGATTTTTCGGCTGGTCGAATTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGATTTGACTCAGAGGGGTAATGGTAGTGTTAGATCCATGTCAGCTAAAATATTGGCACAGTTGAACGTACTTCATGATCAATCTTCATACTTCTAA 3012 0.4011 MMVVDFLSSGSTGTAISQTVETIAEFIVTAKDVLVKKDSFNELGAYMERIKPILEELKKGKVSDSESFNKAIETMNKEIKDAKLLALECSKKSKVYLLMNCRSIAKKIEDHTKQLSWALSLLPLATTGLSSGIVEDIEKLCDSMQKSGFKAALDEEAILEKIDSGIRENNVDRSHANKMLLLIAEAVGIRNERSTIKLELEEFKSEIEKARDRKELAEAMQMDQIIALLERADAASSPREKELRYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSVLRPNKMLKKSIQEWKDRNTMITIATLKEKILSGNDEEVLHDLQIVQNLCEEKEQHREWVILEGYILTLIQSLSRNRDIRRHSLSILGMLAKDSEEAKVKISTADGAIESIVRSLGRNTVERKLAVALLFELSKYDLALEHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSDQNVIQMAKVNYFKHLLQRLSTGPEDVKMIMAKHLAEMDLTEHNREALFDGGVLAPLLLMFSHNDLQVKTVAIKALKNLSNSKKNGQEMIRQGAARPLLNLLFNQSIYTASLWEDLATIIVQLAASTISQDSQTPVLLLDSDDDVFNLFNLVNVSEPVVQQNIIQTFYALCQTPSASCIRTKLKELPAVPKLVELCENENQNLRASAVKLFSCLVENCDEAIIQESVNQRCINTLLRIIKSSSDDEEILSAMGIICYLPETDLITQWLLDAGALEIIKSSVQVGKDRDHQRRTLVENAIGALCRFTVPTNLEWQKSAAETGIITVLVQLLENETTLTKQRVAQCLAQFSRSSFVLSRPIPKRKGLWCFSARADIGCMVHGGICSVKSSFCLLEANAVGPLTRTLEESDPGVCEASLDALLTLIEGERLQHGSKVLADANAIPLIIKYLGSHSPGLLEKSLNALERIFRLVEFKQKYGASAQMPLVDLTQRGNGSVRSMSAKILAQLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02195 1003 Coils Coil 193 220 - -
Viun10g02195 1003 CDD MLKL_NTD 15 127 - -
Viun10g02195 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 336 IPR013083 -
Viun10g02195 1003 CDD RING-Ubox_PUB 263 312 IPR045210 -
Viun10g02195 1003 SUPERFAMILY ARM repeat 428 988 IPR016024 -
Viun10g02195 1003 ProSiteProfiles RPW8 domain profile. 1 156 IPR008808 -
Viun10g02195 1003 Gene3D - 337 624 IPR011989 -
Viun10g02195 1003 Gene3D - 629 844 IPR011989 -
Viun10g02195 1003 SMART arm_5 569 620 IPR000225 GO:0005515
Viun10g02195 1003 SMART arm_5 363 402 IPR000225 GO:0005515
Viun10g02195 1003 SMART arm_5 528 568 IPR000225 GO:0005515
Viun10g02195 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Viun10g02195 1003 SMART arm_5 871 911 IPR000225 GO:0005515
Viun10g02195 1003 SMART arm_5 445 486 IPR000225 GO:0005515
Viun10g02195 1003 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Viun10g02195 1003 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 13 117 IPR008808 -
Viun10g02195 1003 Gene3D - 14 126 IPR036537 GO:0007166
Viun10g02195 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Viun10g02195 1003 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Viun10g02195 1003 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Viun10g02195 1003 Gene3D - 869 1001 IPR011989 -
Viun10g02195 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Viun10g02195 1003 SUPERFAMILY RING/U-box 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02195 Viun-Chr10 36700738 36706741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02195 250 1003 U-box Gene Family AT1G76390 28.713 1.03e-63 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02195 - - gmx:100799969 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02195 10 36700738 36706741 Viun10g02195 10 36700738 36706741 ECH