Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02190 ATGATTTTGTTCCTCATTCAACGCCTCTACAGCTTCATGTGCATCAGCCCTCACTTATATTCAGGTTTTGCTTTTGTCTATTATGAGGACGAGCGAGATGCGGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGAGGAGGCTATCTGTGGAGTGGGCTAGGGGTGAACGAGGACGCCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGGGATATAGAAAAACACTTTGAACCATATGGAAATGTTCTTCATGTCCGGATTCGCCGGAACTTTGCTTTTGTGCAGTTTGAAACTCAAGAAGATGCCACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCTTGGACAGGGTGGTATCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCTAGAAGAGGAGGAGGTGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGACCAAGCCCTGACTATGGCCGTCCACGCAGTCCTGTCTATGATAGGTATAACGGTGGTGGACCTGACAGGCGGAGGAGTCCTGATTATGGCAGACACAGAAGTCCTGATTATGGCAGGCGTAGGAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAACCAAGGAGTCCTGATTATGTGAAGCCGAGGAGTCCTGATTTTGGGAAGCCAAGGAGTCCTGAATTTGGTAGATATCGCAGCCGTTCTCCGGTGCGAAGGTCTAGAACGTAA 810 0.4679 MILFLIQRLYSFMCISPHLYSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDYGRHRSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDFGKPRSPEFGRYRSRSPVRRSRT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02190 269 Gene3D - 18 70 IPR012677 -
Viun10g02190 269 CDD RRM2_AtRSp31_like 78 147 - -
Viun10g02190 269 MobiDBLite consensus disorder prediction 196 261 - -
Viun10g02190 269 SUPERFAMILY RNA-binding domain, RBD 20 151 IPR035979 GO:0003676
Viun10g02190 269 Gene3D - 71 157 IPR012677 -
Viun10g02190 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 92 - -
Viun10g02190 269 FunFam Serine/arginine-rich splicing factor RS31 69 159 - -
Viun10g02190 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 60 IPR000504 GO:0003723
Viun10g02190 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 47 IPR000504 GO:0003723
Viun10g02190 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Viun10g02190 269 MobiDBLite consensus disorder prediction 150 269 - -
Viun10g02190 269 SMART rrm1_1 78 144 IPR000504 GO:0003723
Viun10g02190 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02190 Viun-Chr10 36682076 36684888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02190 22 150 Eukaryotic Initiation Factors Gene Family AT1G49760 25.874 9.46e-08 50.8