Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02188 ATGAGACCGATTTTTGCTGGGAACTTGGAGTACGATACTCGTCAATCGGAGCTTGAACGATTGTTTTCAAAGTATGGAAGAATTGACCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTATTATGAGGACGAGCGAGATGCGGAAGAAGCAATTCGTGCACTTGACAATGTTCCATTTGGTCATGAAAAGAGGAGGCTATCTGTGGAGTGGGCTAGGGGTGAACGAGGACGCCATCGTGATGGATCAAAGGCAAACCAGAGGCCAACAAAAACCCTGTTTGTGATTAACTTTGATCCAATCCGAACTAGAGTTCGGGATATAGAAAAACACTTTGAACCATATGGAAATGTTCTTCATGTCCGGATTCGCCGGAACTTTGCTTTTGTGCAGTTTGAAACTCAAGAAGATGCCACTAAAGCTTTAGAGTGTACAAATATGAGTAAGATCTTGGACAGGGTGGTATCTGTGGAGTATGCTTTGAGGGATGATGGTGAGAGGGGTGACAATTATGATAGTCCTAGAAGAGGAGGAGGTGGTTATGATAGATCACCCAGTCCAGTTTATCACAGGCGACCAAGCCCTGACTATGGCCGTCCACGCAGTCCTGTCTATGATAGGTATAACGGTGGTGGACCTGACAGGCGGAGGAGTCCTGATTATGGCAGACACAGAAGTCCTGATTATGGCAGGCGTAGGAGTCCTGATTATGGCAGGCGCAGGAGTCCTGATTATGGAAAACCAAGGAGTCCTGATTATGTGAAGCCGAGGAGTCCTGATTTTGGGAAGCCAAGGAGTCCTGAATTTGGTAGATATCGCAGCCGTTCTCCGGTGCGAAGGTCTAGAACGTAA 852 0.4671 MRPIFAGNLEYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRHRDGSKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRGGGGYDRSPSPVYHRRPSPDYGRPRSPVYDRYNGGGPDRRRSPDYGRHRSPDYGRRRSPDYGRRRSPDYGKPRSPDYVKPRSPDFGKPRSPEFGRYRSRSPVRRSRT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02188 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Viun10g02188 283 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
Viun10g02188 283 CDD RRM2_AtRSp31_like 92 161 - -
Viun10g02188 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Viun10g02188 283 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Viun10g02188 283 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 257 - -
Viun10g02188 283 SMART rrm1_1 92 158 IPR000504 GO:0003723
Viun10g02188 283 SMART rrm1_1 3 70 IPR000504 GO:0003723
Viun10g02188 283 Gene3D - 1 83 IPR012677 -
Viun10g02188 283 Gene3D - 84 173 IPR012677 -
Viun10g02188 283 MobiDBLite consensus disorder prediction 210 275 - -
Viun10g02188 283 MobiDBLite consensus disorder prediction 164 283 - -
Viun10g02188 283 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Viun10g02188 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Viun10g02188 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02188 Viun-Chr10 36682076 36685120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02188 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 2.48e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02188 K12893 - gmx:100797709 492.271