Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02176 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTAGGGTTACACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTAAGACCTGATATAAAGAGAGGAAACATAACACCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGATTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACTCATCTCTGCAAAAAGCTGAAAAATCAAGGAGCAGAAGATACAGACACACCCAATAATACCTTGGAGAGTCCTGAGCAAGAACCTGCAAATGGCAGCAAAAAGAAGAAAAACGGTGGCAAAAAGAAGAACAAACAGAAGAAGAACAAAGGAGACACCACAAATAATGCAGAGGCAGCAAAGACACAGGTTTACCTACCGAAACCAATCAGAGTGAAGGCTTTGTATTTGCCAAGAACAGATAGTAACACTTACACCTTTGATTCCAACTCAGCAAGTGCATCGACAAACCAAGAAAAGGAAGAAAGCCCCTTCACAAAAGAATCAAACTTGGCTAGTGAATTCGGAAATGTGGGAGAAAGTGATGATTTTGGGTTCTTCAGTGAGGACCATGACTTGGTCAACGCCTCAGATATTGAATGCCACTCTTATTTTCCTTCAGATCATGGCTCTCTGCAACAACTGTATGAAGAATATTACCACCTCCTCAACATGGATCATAGCCAATTCGTCGAAATGAATTCATTTGGAGAATCTTTGTTGGTGTGA 876 0.403 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQGAEDTDTPNNTLESPEQEPANGSKKKKNGGKKKNKQKKNKGDTTNNAEAAKTQVYLPKPIRVKALYLPRTDSNTYTFDSNSASASTNQEKEESPFTKESNLASEFGNVGESDDFGFFSEDHDLVNASDIECHSYFPSDHGSLQQLYEEYYHLLNMDHSQFVEMNSFGESLLV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02176 291 Gene3D - 14 66 - -
Viun10g02176 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun10g02176 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun10g02176 291 CDD SANT 16 61 IPR001005 -
Viun10g02176 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun10g02176 291 Gene3D - 69 136 - -
Viun10g02176 291 MobiDBLite consensus disorder prediction 194 216 - -
Viun10g02176 291 MobiDBLite consensus disorder prediction 119 171 - -
Viun10g02176 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun10g02176 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun10g02176 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 220 - -
Viun10g02176 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun10g02176 291 FunFam MYB transcription factor 68 127 - -
Viun10g02176 291 MobiDBLite consensus disorder prediction 122 137 - -
Viun10g02176 291 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun10g02176 291 MobiDBLite consensus disorder prediction 194 209 - -
Viun10g02176 291 FunFam Myb transcription factor 11 67 - -
Viun10g02176 291 CDD SANT 71 112 IPR001005 -
Viun10g02176 291 SMART sant 66 114 IPR001005 -
Viun10g02176 291 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02176 Viun-Chr10 36601293 36602612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02176 4 143 MYB Transcription Factor Family AT3G13540 65.035 6.25e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun10g02176 Myb_DNA-binding 9.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02176 K09422 - gmx:100803345 466.463