Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02167 ATGGACCAACCGCCGCACCACCACAGCAGCGCCGCCACTAACTCCGCCGATAAGCCCGCCACGCAGCGAGGCGGCACGCGCCACCCGCTCTTCCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAGTCGCGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCGAAGGCCTACGACGTCGCCGCCTACTGCCTCAAGGGCCGCAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTCCCTTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCCACATGATGATAGTCCAGGCCGCCGCCGCCGCCGCCCCCGACTCTCCGGGGAAGAGCAGCATTACCTCCGGCTGCGACCACGCAGCCGATGACTTCTGGCGAGAGATTGAGCTGCCGGAGCTCCTCCACAGCAAGTGGTGGACCTCCTCCGCCGACTCCTCGCCGTGGACGGAGGATGACCTCTCGCCGCAGCAACCCTTCACCACGGCGTGCTTGTAG 558 0.6953 MDQPPHHHSSAATNSADKPATQRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAAHMMIVQAAAAAAPDSPGKSSITSGCDHAADDFWREIELPELLHSKWWTSSADSSPWTEDDLSPQQPFTTACL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02167 185 MobiDBLite consensus disorder prediction 1 21 - -
Viun10g02167 185 MobiDBLite consensus disorder prediction 166 185 - -
Viun10g02167 185 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Viun10g02167 185 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 MobiDBLite consensus disorder prediction 1 32 - -
Viun10g02167 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 158 - -
Viun10g02167 185 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Viun10g02167 185 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Viun10g02167 185 FunFam Ethylene-responsive transcription factor 2 29 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02167 Viun-Chr10 36527558 36528437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02167 2 185 AP2-EREBP Transcription Factor Family AT1G01250 52.381 4.54e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g02167 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02167 K09286 - gmx:100802845 250.751