Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02166 ATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGATGGTGGTGGAGGTGCTGGGTCGCGGCGCGTTTGATTACTTGGTGGCGAATTCTGTTTCTAACGAGAATCTGTTAATGGCGCTTGGGAGCGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTCCTAACGCGTCGAACTTCAGTTGGAACTATGCGATCTTCTGGCAAATTTCGCAGTCGAAGTTTGGGGATTGGGTCTTGGGGTGGGGAGATGGGTGTTGCAGGGAACCGAGGGAGGGAGAAGAGAGCGGAGAAGTGAGAGGGAGAGGGGTTGTTGGTGACGACGAGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCTGATGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTGGGGGGTCCAGGTAAGTGTTTTGCTTCCGGGAAGCATTTGTGGCTCTCAGATGTGTTCAAATCTAGTTTTGATTACTGTGTGAGGTCTTTCTTGGCCAAATCTGCTGGAATTCAGACTGTTGTTTTGGTTCCTACTGATATGGGGGTGGTGGAGATGGGGTCTGTGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCATGCTTTGAAGTCTGTGTTTTCTGCACAGGCATCGTTGGTCCCGCCCAGGGTTAAGCCAATTGCACCATTTGATTTGGTGAGCGAGAAAAGAGATGAGAATGCAAATGCCCTTTTCTCTGGTGTGGCAATTGGGGACAAGGAAAAGAACAACAGCAGTAATGGTAGTAACAATAGAGTAGAAGGAAACGGAGTTCCAAAGATTTTTGGGCAAGATTTGAACAGTGTGACTCAATTCAGGGAGAAACTTGCTGTGAGGAAAATGGAGGAGAGGCCAAGGGCTTGGGGAGGTCACCCCAATGGGAATAGTATTGGTTTTCCAAACGGTATCCATGGTTCTAGTTGGGGGGCAGGTCAAGTCATGAGACAGCTTGGTCCTCCTGAAATTCTTGCTCCTAGGTTGTCCACCTCCGGTGCATTGTCGGTGCCGGAGCTGGCCAATGGCACAAGGCATGATTTTGTGCATAACAATTACCAGCAGCAAAGGCCGGCTCAGATGCAGATTGATTTCTCAGGAGCCACTTCAAGGGCTTCAGGGAGATCAATGATTGCTGAATCTGAGATTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAGAGCGAGTGTTGCAGATGACCGGAGGCCGAGGAAGCGGGGAAGGAAGCCGGCGAATGGAAGGGAGGAGCCCCTCAACCATGTGGAGGCAGAGAGGCAAAGGAGGGAGAAGCTGAACCAGCGGTTCTATGCCCTGCGTGCTGTTGTTCCAAACATCTCCAAGATGGACAAGGCATCTCTGTTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCCAAACTCAAGAGCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACCTCCTCTATGGATGGATCAGTAATGGAGGCCAATGCTAGATCAGAAAATCACAGTAATGGAGTTTCTGATGTGGATGTTGAAGCTGCACAAGATGGGGTGGTAGTAAAGGTGAGCTGCCCTATTGATTTTCATCCGATTTCAAAAGTGATTCAAACCCTGAAAGAAGCAGAGATTGGTGTTGTTGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTGAGGGACCTGATCAGCTGACTAAGGAAAAGTTGATTGCATTGTTTTCCAAAGAATCCAACTCCATACAGACATTGTGA 1872 0.4866 MKIEVGLGGVWNEEEKAMVVEVLGRGAFDYLVANSVSNENLLMALGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEESGEVRGRGVVGDDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSSFDYCVRSFLAKSAGIQTVVLVPTDMGVVEMGSVRMVGESFELLHALKSVFSAQASLVPPRVKPIAPFDLVSEKRDENANALFSGVAIGDKEKNNSSNGSNNRVEGNGVPKIFGQDLNSVTQFREKLAVRKMEERPRAWGGHPNGNSIGFPNGIHGSSWGAGQVMRQLGPPEILAPRLSTSGALSVPELANGTRHDFVHNNYQQQRPAQMQIDFSGATSRASGRSMIAESEISDVEASCKEERASVADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKSMESERERFGSTSSMDGSVMEANARSENHSNGVSDVDVEAAQDGVVVKVSCPIDFHPISKVIQTLKEAEIGVVDSKLTAANDTVFHTFVVKSEGPDQLTKEKLIALFSKESNSIQTL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02166 623 PANTHER MYC 38 611 IPR045084 GO:0003700|GO:0006355
Viun10g02166 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 239 IPR025610 -
Viun10g02166 623 SMART finulus 458 507 IPR011598 GO:0046983
Viun10g02166 623 MobiDBLite consensus disorder prediction 426 463 - -
Viun10g02166 623 Pfam Helix-loop-helix DNA-binding domain 456 502 IPR011598 GO:0046983
Viun10g02166 623 Gene3D - 445 517 IPR036638 GO:0046983
Viun10g02166 623 MobiDBLite consensus disorder prediction 278 293 - -
Viun10g02166 623 MobiDBLite consensus disorder prediction 278 298 - -
Viun10g02166 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Viun10g02166 623 CDD bHLH_AtAIB_like 449 520 - -
Viun10g02166 623 FunFam Transcription factor bHLH13 445 519 - -
Viun10g02166 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 515 IPR036638 GO:0046983
Viun10g02166 623 Coils Coil 491 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02166 Viun-Chr10 36486661 36489565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02166 10 622 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 53.698 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02166 bHLH-MYC_N 8.7e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02166 - - gmx:100807078 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02166 10 36486661 36489565 Viun10g02166 10 36486661 36489565 ECH
Viun6g01804 6 25228272 25231039 Viun10g02166 10 36486661 36489565 PCT