Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02153 ATGGGCATCTTGGAAATCCTTTTTCTCTCCTTCATCTTTCCTGTCATATATGCCTCAAGTGACTGCCAATTTTCTTTTTGTGGCAGCAATAACATCATTATTCGTTTCCCCTTTCAACGAGAAGATGAGCAAAATCCTTATTGTGGGTATCCTGGTTTCAACTTAATTTGCACGAATAATAGCAAAACAGTGCTAAAACTTCCTTACTCTGGAGTATTCTACGTGCGCAACATTAACTACCTCGCACAAAAGATACAAGTCTACGACCCTGACGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATGTCTCAGACTCTCCTTTTATTCACACTTTTACTCGTAACTACACCTTCTTAAGCTGCCCATTTCAGAACGCAGGATCACAATTCATTCCCATTGACTGTCTCAGTAATTCCACACATTTTGTATCAGCTGTCCCTTCACTGAATTTGCCTAATCCATTACCAGCATCTTGCTATGTTATTACAAGTCTTTTTGTCCCAGTTGCAGGGCCAGAGCAGCAGTATGATGGTAATTTCAAAGGTGAGTTTAGTCAAGATCTTGTATTAACATGGGATAGACCTGACTGCAGATATTGTGAATCACAAGACCAATTGTGTGGGTTTGATCGAAACAACAACAAACAACTCTTATGTTTCTCTTACCAAACAGGTCCATCACAACAAGGAATCCAAATATTCAGAATCATCACATTGTGCATTGCTGGACCAGCAGCAATCTTTGCAATTTTGATGGCATGTTGCGTGTGCTACAAGGACAGAATAGCCAACATTCGTAACATTGCTATTGCAAGGTCTGCACCAGCCACAATATTACCAGCACCACAGATTGCTGCAACGGGTTTGGACGAGTCCACCATTGAGTCCTACGAGAAGGTAGTGCTTGGAGAGAGTAGAAGAGTCCCTGGACCCAACGGTGGTTGCTGTTGGATATGCTTATCAGAGTACAACAGCAAAGAGACAATACGATGCATTCCAGAATGCGAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATCAATACCACATGCCCAGTTTGTCGAAACACTCCCTCTCCTTCTCCTCTTCATGTTACCTCCATTAACCCCTAA 1122 0.4278 MGILEILFLSFIFPVIYASSDCQFSFCGSNNIIIRFPFQREDEQNPYCGYPGFNLICTNNSKTVLKLPYSGVFYVRNINYLAQKIQVYDPDDCLPKRLLSLNVSDSPFIHTFTRNYTFLSCPFQNAGSQFIPIDCLSNSTHFVSAVPSLNLPNPLPASCYVITSLFVPVAGPEQQYDGNFKGEFSQDLVLTWDRPDCRYCESQDQLCGFDRNNNKQLLCFSYQTGPSQQGIQIFRIITLCIAGPAAIFAILMACCVCYKDRIANIRNIAIARSAPATILPAPQIAATGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECEHCFHADCIDEWLRINTTCPVCRNTPSPSPLHVTSINP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02153 373 CDD RING-H2_EL5-like 315 358 - -
Viun10g02153 373 SMART ring_2 316 357 IPR001841 -
Viun10g02153 373 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Viun10g02153 373 Pfam Ring finger domain 316 358 IPR001841 -
Viun10g02153 373 Pfam Wall-associated receptor kinase C-terminal 156 221 IPR032872 -
Viun10g02153 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 362 IPR046948 -
Viun10g02153 373 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Viun10g02153 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 363 IPR013083 -
Viun10g02153 373 SUPERFAMILY RING/U-box 315 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02153 Viun-Chr10 36356093 36358817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02153 24 363 C3H Transcription Factor Family AT2G25410 44.669 2.99e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02153 - - gmx:100798415 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02153 10 36356093 36358817 Viun10g02153 10 36356093 36358817 ECH
Viun6g01783 6 25075073 25077320 Viun10g02153 10 36356093 36358817 PCT