Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02148 ATGACTACAAAGGGACAGAGATTTGTTAGGTTTAAGGATTGGAAGTCATTTTCATCTTCAAGTATTGAGCACAATGATTCCACTAGTGAGGGATTTCACGAAAAGAAAGTTCAATCAAGCGAAAGCTCTGTCAGTGATGAATCAATCAGAAATTTGTCCTGCAAGAGGCATGTTCTTCATCCACAGGGGCCAACACTTCAAAAGTGGAACAAAATTTTTGTAATCACAAGTGTTATGGCAATCTCTGTGGATCCACTTTTCTTTTACATCCCAGTGATCGATGACAGTAAAAAATGCCTTGATTTGGATGGAACACTCAAGATCACTGCCAGTGTTCTCCGCACATTCTTTGATCTTCTCTACATTCTTCACATTATCTTTCAGTTTCGAACCGGGTTTATTGCCCCTTCCTCACGTGTGTTTGGAAGGGGTGAGCTTGTTGATGACCCTTCAGCCATAGTGATGAAATACTTAAGTTCTTACTTCACCATTGACATTCTGTCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCATATCCCCAACATGCTCAGCTCCATATGTGGGAAAGGATTTGTTGAAGTACACAGTAATAGCCCAGTACGTGCCAAGGCTTCTTCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGAATATTGACTGAGACAGCATGGGCTGGAGCAGTTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAGGCGGCTGAAGAATACTACTATTTCCTATCATGAATCCTACCTTAGCTGTAGATCTAAAAATTCTAATATCCAATCATTTCCCAATATTCAATCACTTCTCGTTCAATCTTGCCCTATCACTGATCTAGATAAGATTGTAGACCTGGATGCTTTCAATTTTGGAATTTTCATAGAAGCTCTAAAGTATCGAGTGGTAGAATCAACAACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCAGTTGGGCAAGGTCTCGAGACAAGTACTTATGTAGGGGAGATAATCTTTGCTATCTCCATTGCTGTCTTTGGATTGGTTCTGTTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATAAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTCCTGAAGCAAAGAATTAGACGCTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAGGAAGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGAGACATAAAGCGCCATCTTTGCTTAGATCTACTTAAAAAAGTGCCGATGTTTGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTGGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCAACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTAACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAGGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCTTTACAATGGAAGACATGGGGTGCGTGTTTCATACAAGCAGCATGGCGTAGATACAGAAAAAAGAAGGCAGAGAGGTTGTTGCGTGAAGCAGAAGAAAGAATACAAAATCTGGAGAATGAGGAAGGGTCTTCACCTAGCTTTGCTGCCACTGTATATGCATCAAAGTTTGCATCAAATGCATTGCGCCACCTGCGAAGTGGAAAACGTACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCAGAAGCCTTCTGAACCAGATTTCACTGCTCTGAACAACTAG 2103 0.418 MTTKGQRFVRFKDWKSFSSSSIEHNDSTSEGFHEKKVQSSESSVSDESIRNLSCKRHVLHPQGPTLQKWNKIFVITSVMAISVDPLFFYIPVIDDSKKCLDLDGTLKITASVLRTFFDLLYILHIIFQFRTGFIAPSSRVFGRGELVDDPSAIVMKYLSSYFTIDILSIIPLPQMVILAMIISPTCSAPYVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAVYNLFLYMLASHVVGAFWYLFSVESRVRCWRRRLKNTTISYHESYLSCRSKNSNIQSFPNIQSLLVQSCPITDLDKIVDLDAFNFGIFIEALKYRVVESTTDFHHKFFYCFWWGLRSVSSVGQGLETSTYVGEIIFAISIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKGVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSSPSFAATVYASKFASNALRHLRSGKRTRVPQPQKLLPLMPQKPSEPDFTALNN 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02148 700 SUPERFAMILY cAMP-binding domain-like 400 588 IPR018490 -
Viun10g02148 700 MobiDBLite consensus disorder prediction 669 700 - -
Viun10g02148 700 Pfam Ion transport protein 69 399 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun10g02148 700 Gene3D - 72 395 - -
Viun10g02148 700 Gene3D Helix hairpin bin 398 462 - -
Viun10g02148 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 695 - -
Viun10g02148 700 ProSiteProfiles cAMP/cGMP binding motif profile. 471 555 IPR000595 -
Viun10g02148 700 FunFam Cyclic nucleotide-gated ion channel 1 469 587 - -
Viun10g02148 700 SUPERFAMILY Voltage-gated potassium channels 60 393 - -
Viun10g02148 700 Pfam Cyclic nucleotide-binding domain 492 584 IPR000595 -
Viun10g02148 700 MobiDBLite consensus disorder prediction 27 41 - -
Viun10g02148 700 SMART cnmp_10 471 602 IPR000595 -
Viun10g02148 700 Gene3D Jelly Rolls 469 589 IPR014710 -
Viun10g02148 700 Coils Coil 624 647 - -
Viun10g02148 700 CDD CAP_ED 471 603 IPR000595 -
Viun10g02148 700 MobiDBLite consensus disorder prediction 17 44 - -
Viun10g02148 700 FunFam Cyclic nucleotide-gated ion channel 1 398 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02148 Viun-Chr10 36326857 36330884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02148 9 699 Ion Channels AT4G01010 59.944 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02148 K05391 - gmx:100795201 1171.38