Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02146 ATGCAGAATTTGCTTCTTTCTTTAGTTTGGAGCTACTCAACTTCCTGCTTTGTTCCTGTAGTAAGTAAAGGAAACAGAGAAGAAACTTTGCACTATCAAGCAACATTTACATGGCTAACAAGGTTTAAGGATTGGAAGTCATTTTCATCTTCAAGTATTGAGCACAATGATTCCACTAGTGAGGGATTTCACGAAAAGAAAGTTCAATCAAGCGAAAGCTCTGTCAGTGATGAATCAATCAGAAATTTGTCCTGCAAGAGGCATGTTCTTCATCCACAGGGGCCAACACTTCAAAAGTGGAACAAAATTTTTGTAATCACAAGTGTTATGGCAATCTCTGTGGATCCACTTTTCTTTTACATCCCAGTGATCGATGACAGTAAAAAATGCCTTGATTTGGATGGAACACTCAAGATCACTGCCAGTGTTCTCCGCACATTCTTTGATCTTCTCTACATTCTTCACATTATCTTTCAGTTTCGAACCGGGTTTATTGCCCCTTCCTCACGTGTGTTTGGAAGGGGTGAGCTTGTTGATGACCCTTCAGCCATAGTGATGAAATACTTAAGTTCTTACTTCACCATTGACATTCTGTCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCATATCCCCAACATGCTCAGCTCCATATGTGGGAAAGGATTTGTTGAAGTACACAGTAATAGCCCAGTACGTGCCAAGGCTTCTTCGGATCTACCCTTTATTCAAAGAAGTAACAAGCACTTCTGGAATATTGACTGAGACAGCATGGGCTGGAGCAGTTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAGGCGGCTGAAGAATACTACTATTTCCTATCATGAATCCTACCTTAGCTGTAGATCTAAAAATTCTAATATCCAATCATTTCCCAATATTCAATCACTTCTCGTTCAATCTTGCCCTATCACTGATCTAGATAAGATTGTAGACCTGGATGCTTTCAATTTTGGAATTTTCATAGAAGCTCTAAAGTATCGAGTGGTAGAATCAACAACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCAGTTGGGCAAGGTCTCGAGACAAGTACTTATGTAGGGGAGATAATCTTTGCTATCTCCATTGCTGTCTTTGGATTGGTTCTGTTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATAAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCAGATTTCCTGAAGCAAAGAATTAGACGCTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAGGAAGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGAGACATAAAGCGCCATCTTTGCTTAGATCTACTTAAAAAAGTGCCGATGTTTGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTGGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCAACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTAACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAGGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCTTTACAATGGAAGACATGGGGTGCGTGTTTCATACAAGCAGCATGGCGTAGATACAGAAAAAAGAAGGCAGAGAGGTTGTTGCGTGAAGCAGAAGAAAGAATACAAAATCTGGAGAATGAGGAAGGGTCTTCACCTAGCTTTGCTGCCACTGTATATGCATCAAAGTTTGCATCAAATGCATTGCGCCACCTGCGAAGTGGAAAACGTACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCAGAAGCCTTCTGAACCAGATTTCACTGCTCTGAACAACTAG 2196 0.4158 MQNLLLSLVWSYSTSCFVPVVSKGNREETLHYQATFTWLTRFKDWKSFSSSSIEHNDSTSEGFHEKKVQSSESSVSDESIRNLSCKRHVLHPQGPTLQKWNKIFVITSVMAISVDPLFFYIPVIDDSKKCLDLDGTLKITASVLRTFFDLLYILHIIFQFRTGFIAPSSRVFGRGELVDDPSAIVMKYLSSYFTIDILSIIPLPQMVILAMIISPTCSAPYVGKDLLKYTVIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAVYNLFLYMLASHVVGAFWYLFSVESRVRCWRRRLKNTTISYHESYLSCRSKNSNIQSFPNIQSLLVQSCPITDLDKIVDLDAFNFGIFIEALKYRVVESTTDFHHKFFYCFWWGLRSVSSVGQGLETSTYVGEIIFAISIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKGVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSSPSFAATVYASKFASNALRHLRSGKRTRVPQPQKLLPLMPQKPSEPDFTALNN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02146 731 FunFam Cyclic nucleotide-gated ion channel 1 429 493 - -
Viun10g02146 731 CDD CAP_ED 502 634 IPR000595 -
Viun10g02146 731 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 726 - -
Viun10g02146 731 Gene3D Jelly Rolls 500 620 IPR014710 -
Viun10g02146 731 SMART cnmp_10 502 633 IPR000595 -
Viun10g02146 731 FunFam Cyclic nucleotide-gated ion channel 1 500 618 - -
Viun10g02146 731 SUPERFAMILY cAMP-binding domain-like 431 619 IPR018490 -
Viun10g02146 731 MobiDBLite consensus disorder prediction 54 75 - -
Viun10g02146 731 MobiDBLite consensus disorder prediction 58 72 - -
Viun10g02146 731 Coils Coil 655 678 - -
Viun10g02146 731 ProSiteProfiles cAMP/cGMP binding motif profile. 502 586 IPR000595 -
Viun10g02146 731 Gene3D Helix hairpin bin 429 493 - -
Viun10g02146 731 Pfam Ion transport protein 100 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun10g02146 731 Pfam Cyclic nucleotide-binding domain 523 615 IPR000595 -
Viun10g02146 731 Gene3D - 103 426 - -
Viun10g02146 731 MobiDBLite consensus disorder prediction 700 731 - -
Viun10g02146 731 SUPERFAMILY Voltage-gated potassium channels 91 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02146 Viun-Chr10 36326664 36330884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02146 60 730 Ion Channels AT4G01010 62.519 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02146 K05391 - gmx:100795201 1158.67