Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02138 ATGCATACAAAGCTGTTAACCCAAATTCGTCTTCTTCATCCCCTTATTCCCATGAAGCCTCGCACTCTTCCTCTTCTCTCACGCGCCTTTTTCTTCCCTCCCTCCAAGTTTCTCCGAAGCGCACCGTTTAAAGCTCGCGCCTTTTCCTCCCGGGTCCACGCTCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTCGACGACGAGGCTGACCTCAGCGATTGGGTCGATGATTTGCGGACCGGCCGGGTCGACCGCTTCTCCAAGCGGTTCAGCAGCGACGACGATGAGGACCGAAAATTCCCGCCGCCGCGGAGGAACAACAATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGATTTGCGGAGGGGAAGGCAGAATGTGGGCGCGAGGAGAAAGTTTCAACCGAGGAGTGACGACGATGAGGAAGTGGTGGAGAGTGGAAGGAAGCTCAAGGGAGGTGGCGTTGGAGCGTTTCTCAGCGAAGATGAAAGTGAAGATGAAGAGAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTCTGAACCGGAGGACGGTTGAACCGACTCCTAGACCATCTTCTCCTGGAGGTTCTGATTCTTATCTGAGTGAATCAAGATTTGACCAATGTTCAGTCTCCCAGCTGTCACTTAAAGGAGTAAAGGATGCTGGATATGAGAAAATGACAGTCGTGCAAGAGGCTACTCTTCCAGTAATTCTAAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACCGGAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGCGAAGTCACCTCCAAGTGATCGTGATCACAGGCGGCCACCAATTTCTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGTCAGGCTGCTGCAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCAACTAGGCTTATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAGGATAATTTCTGCTGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCACATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTTCTGAGGAGACACATTCACAGGTCCTCCAGAAGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTACTGTATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAACAGATAGAGAACAATATATACATCGCCTGGGTAGAACGGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACTGTAAAAGATTTGCCTATCGAGAAAGTTCCCGTGGTACCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTTTAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCCATTGCTAAGCTGGTTCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAA 2076 0.4754 MHTKLLTQIRLLHPLIPMKPRTLPLLSRAFFFPPSKFLRSAPFKARAFSSRVHAHARDKLPVRPSKSLVDDEADLSDWVDDLRTGRVDRFSKRFSSDDDEDRKFPPPRRNNNRASTNLGKRRGEDLRRGRQNVGARRKFQPRSDDDEEVVESGRKLKGGGVGAFLSEDESEDEESDGSEEEEILNKSRTALFGQQNGLNRRTVEPTPRPSSPGGSDSYLSESRFDQCSVSQLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPISVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIISAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGSEETHSQVLQKHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKVPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKFRLVELANEFSRSMGLDNPPAIAKLVLGKMGLRNIPGLRAK 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02138 691 MobiDBLite consensus disorder prediction 166 180 - -
Viun10g02138 691 MobiDBLite consensus disorder prediction 118 154 - -
Viun10g02138 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 618 IPR001650 -
Viun10g02138 691 SMART ultradead3 241 454 IPR014001 -
Viun10g02138 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 436 IPR014001 -
Viun10g02138 691 Pfam DEAD/DEAH box helicase 247 424 IPR011545 GO:0003676|GO:0005524
Viun10g02138 691 Gene3D - 181 437 IPR027417 -
Viun10g02138 691 MobiDBLite consensus disorder prediction 94 108 - -
Viun10g02138 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 591 IPR027417 -
Viun10g02138 691 CDD DEADc_MSS116 229 438 - -
Viun10g02138 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Viun10g02138 691 PANTHER RNA HELICASE 176 619 - -
Viun10g02138 691 CDD SF2_C_DEAD 451 584 - -
Viun10g02138 691 MobiDBLite consensus disorder prediction 94 222 - -
Viun10g02138 691 Gene3D - 445 675 IPR027417 -
Viun10g02138 691 SMART helicmild6 494 575 IPR001650 -
Viun10g02138 691 MobiDBLite consensus disorder prediction 188 222 - -
Viun10g02138 691 Pfam Helicase conserved C-terminal domain 475 575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02138 Viun-Chr10 36273137 36279350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02138 222 600 Eukaryotic Initiation Factors Gene Family AT3G19760 28.321 5.72e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02138 - - gmx:100795739 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02138 10 36273137 36279350 Viun10g02138 10 36273137 36279350 ECH