Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02106 ATGAGCTCTCAGTCACAACAACAGCAACAAGGAAAACACAAGAACCGAGAAGAGGAAGAGGAGGAAGAAGAAAACCATTTGTTACAATCAGAATGCGAGACAATACCGTTATCCTCACCAGACGTATTACTCTCAAACTGGGAACATGCAGACAAAGAAAAACAAGAAGAAGAGAAAGACGCGGTGTATGCAGCGAAGGACAAGGTGCAGATATTTGACTTGGAGGCTTCCGGCAGCGCAGGGTCCACGGCGGTGCCGCCGTTTTCGTGGAGGAAGCTGTGGCTGTTCACGGGGCCAGGGTTGTTGATGAGCGTGGCGTTTTTGGACCCGGGGAACCTTGAAGGGGACCTTCAAGCTGGTGCAATTGCAGGGTACTCCTTGCTTTGGTTGCTGATGTGGTCCACCATCATGGGGTTGGTGATACAGCTTCTGTCGGCGAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTTTGCAGGGAGGAGTACTCCAATTGGGCTAGGTTGGTGCTGTGGATCTTGGCTGAGATGGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCCATTGCTTTCAAGATTCTTAGCCATGGCCTTATCCCCATTTGGGCTGGTGTGGTTATCACAGCCACGGATTGTTTCTTCTTTCTATTTCTGGAGAACTATGGAGTGAGGAAGTTGGAAGGGGTTTTCGCAGTTTTCATTGGAACTATGGGCCTTTCTTTTGCGTGGATGTTCTTTGATACAAAACCCAGTGAAGAAGAACTAATGATGGGTCTCTTAATCCCAAGACTTAGTTCAAAAACTCTTCGCCAGGCGGTGGAAATTGTGGGGTGTGTGATAACCCCACATAACGTGTTCCTCCATTCTGCATTGGTACAATCAAGGGACATTGATATCCGAAACAAAGGGCAGGTTCAAGAGGCTCTCAACTACTACTCCATTGAGTCTTCAGTTGCACTTTTAGTGACACTGTTGATAAATCTATCTGTGATAACAGTTTTTGCCAGAGTTTTCTATGGCACAGAACAGGCCAATGGCATAGGGTTGGTAAATGCAGGGCAATATCTTGAGGAAAGGTATGGGGGAGGGTTGTTTCCAATTTTGTATATATGGGGCATTGGTTTATTAGCAGCAGGGCAAAGTAGTACCATAACTGGCACTTATGCTGGCCAGTTTATAACAGAGGGTTTTCTTAAGCTCAATATAAAGAAATGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCTATTGTTTTTAATACATCAGAAAGTTCATTGGATACCTTGAATGAATGGCTTAATGTGGTGCAAGCAATTCAGATTCCCTTTGCTCTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTCATGGGAACCTTCAGAATAGGGCCTATAGTAGAGAAAGTGGCTTGGAGTGTGGCTGTGCTGGTAATACTAGTTTATGGATATATGTTATTAGATTTCTTCCTGGATGAAGTAGATGGAGTATTGTTTGGTTTTCTGGTGTGCCTTGGTGCTGCAGCATGGATTTCATTCATTGTATATTTGGTTCAACACAGTGGTGCCATTCCTTCACTCATGATGAGGTCCCCTAATTCAAGAGGTTTTTTCTCTCTTTCTAGGAACTAA 1665 0.4553 MSSQSQQQQQGKHKNREEEEEEEENHLLQSECETIPLSSPDVLLSNWEHADKEKQEEEKDAVYAAKDKVQIFDLEASGSAGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAEMALIAADIQEVIGSAIAFKILSHGLIPIWAGVVITATDCFFFLFLENYGVRKLEGVFAVFIGTMGLSFAWMFFDTKPSEEELMMGLLIPRLSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLVTLLINLSVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSESSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVEKVAWSVAVLVILVYGYMLLDFFLDEVDGVLFGFLVCLGAAAWISFIVYLVQHSGAIPSLMMRSPNSRGFFSLSRN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02106 554 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 91 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 19 530 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 MobiDBLite consensus disorder prediction 1 32 - -
Viun10g02106 554 Pfam Natural resistance-associated macrophage protein 114 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 172 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 411 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 202 221 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 445 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 276 299 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 383 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 PRINTS Natural resistance-associated macrophage protein signature 227 248 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 Hamap Divalent metal cation transporter MntH [mntH]. 79 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02106 554 NCBIfam Nramp family divalent metal transporter 98 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02106 Viun-Chr10 35895388 35898388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02106 56 532 Inorganic Solute Cotransporters AT1G47240 74.113 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02106 K21398 - gmx:100801411 956.436