Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02064 ATGTCTCTCTCTGAACTTCAAAAGCAAACTCAAAATGTAAGCCAAGTTACTCCAGAAAAGGAGAACTGGAATATCATTGTTAGGGTGATACGTTCATGGTTCGTTCCAGATTTCACTAAACAGAGGTGTCCTTTTTCCATGGAGTTGGTTATTCAAGACAAAGAGGGTTCTAAAATACATGCTTCCATCAGACGTACTCTAATTTACAAATTCCAGACTAAAATTTCTGAAGGTGATGTTTATGCCATACAAAATTTCAGTGTTGCTCCAAATTCTGGAATTTACAGAACTACGCACCACCCTTATAAGATTAATTTCCAGTTTGGTACCAAAGTTAGTTTGCTTGATGGTAACTTGGTTCCTGATGTGAAACCACAATACACACCTTTGTCATTATTGACAACCACTAGATTCGATACTGATTATTTAGTTGATGTATTGGGATTACTGGTCGGAGTGGGTACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATTGCAATAGAAGCTGATGGGTTTCGAATAGAATGTACTTTGTTTGGTATTTATGTCGATGAACTGAATGTATTTCTTTCAAGTGGAGAAGTACAAAATTGTGCTATAAGTATAGAATTTGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAACTTCAAAATTGCAAGTTCTGCACTAGGATTAAGTACAATGTTAACTTCAAGGAGGCATCTGAACTTAAATCAAGGATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAGCTGTCTCAGACTTCCAAAAATACTGTGGAAGAAGACTTTTTAACTGTTACACCTAGGACGACTATTCAAGGTCTTAAAGATTGTAAAGAGGTTGCAACTTTCATATTGTTTGGAACCATTAACCATATCTTGGATGAGGATGACTGGTGGTATACGGCTTGTGTTTGCAACAAAGTTGTTTATCCAGATTCAAAGATGTTCTTTTGCGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGGTTCGAGTTATTGACTCATCCGATTCCATCACATTTGTTCTGTTTGATAGGGATGCAACCACCCTTTTCAAAAAAACCTGTGCTGATATGTTAGAGTCTCATGATAAGATGAATGGTTGTGGGAATTTTCCTAAGGAGTTTGAAGAATTAGTTAATAAAAGTCTGCTGTTTAAAGTTGAAAGTAGGAACGATCAAACTTTCAAACTTGAACAATCTTTCAGAGTGAAGAAAATATGTCTTGATGATGATATAATTGAGAAGTTCAATGATTCTTCGTTGAAATCTGTG 1326 0.3544 MSLSELQKQTQNVSQVTPEKENWNIIVRVIRSWFVPDFTKQRCPFSMELVIQDKEGSKIHASIRRTLIYKFQTKISEGDVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLLDGNLVPDVKPQYTPLSLLTTTRFDTDYLVDVLGLLVGVGTERELQVDGKTTKLNVIAIEADGFRIECTLFGIYVDELNVFLSSGEVQNCAISIEFAKVKTFQDKVQLQNCKFCTRIKYNVNFKEASELKSRMIENNESPSQGLTQLSQTSKNTVEEDFLTVTPRTTIQGLKDCKEVATFILFGTINHILDEDDWWYTACVCNKVVYPDSKMFFCEKCNKHVIKVFPRYRIKVRVIDSSDSITFVLFDRDATTLFKKTCADMLESHDKMNGCGNFPKEFEELVNKSLLFKVESRNDQTFKLEQSFRVKKICLDDDIIEKFNDSSLKSV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02064 442 CDD RPA1_DBD_B_like 145 248 - -
Viun10g02064 442 CDD RPA1_DBD_A_like 25 112 - -
Viun10g02064 442 Gene3D - 259 429 IPR012340 -
Viun10g02064 442 Pfam Domain of unknown function DUF223 48 117 IPR003871 -
Viun10g02064 442 Pfam Replication factor-A C terminal domain 296 418 IPR013955 -
Viun10g02064 442 SUPERFAMILY Nucleic acid-binding proteins 136 247 IPR012340 -
Viun10g02064 442 CDD RPA1_DBD_C 294 424 IPR047192 -
Viun10g02064 442 SUPERFAMILY Nucleic acid-binding proteins 12 115 IPR012340 -
Viun10g02064 442 Gene3D - 8 113 IPR012340 -
Viun10g02064 442 Gene3D - 120 256 IPR012340 -
Viun10g02064 442 SUPERFAMILY Nucleic acid-binding proteins 277 411 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02064 Viun-Chr10 35542898 35544936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02064 6 421 Core DNA Replication Machinery Family AT5G08020 23.077 1.77e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02064 - - vun:114165619 875.93