Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02056 ATGTCCTCCTTGAACTCCTTCTCCCCTCCACCCCCCACCCCTTACTTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGAGTCCTCTTCCTCATCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCACCGCCGCCGCCGCCACAACCCCCACGCCCCTGATGGCATCGTCCTCCCTCGCGTTATTTTCGTCGCCGAGGACGACGACGACGGCGCCCGACAGAACGACGCCGTCTCCGGGCTCGAACAGGCAGTCATAAACTCCTACCCCAAGTTCCCCTTCGTGAAAGACGGCGGCTACGACACCACGTGCTCCATCTGTCTCTGCGAGTACAAGGATTCGGAGATGCTGAGAATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTGCAGGAGGTGGTGCCACTCTCGCAGTACGCCGCCGATGCTAGGGGGAGGAGGTGA 567 0.6314 MSSLNSFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRTLRHRNNNHRRRRHNPHAPDGIVLPRVIFVAEDDDDGARQNDAVSGLEQAVINSYPKFPFVKDGGYDTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02056 188 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Viun10g02056 188 SMART ring_2 117 158 IPR001841 -
Viun10g02056 188 PANTHER RING-H2 FINGER PROTEIN ATL67 13 185 IPR044289 GO:0016567|GO:0016740
Viun10g02056 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 164 IPR013083 -
Viun10g02056 188 Pfam Ring finger domain 116 159 IPR001841 -
Viun10g02056 188 SUPERFAMILY RING/U-box 104 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02056 Viun-Chr10 35496360 35498411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02056 9 179 C3H Transcription Factor Family AT5G06490 36.842 1.43e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02056 - - vra:106773185 362.844