Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02004 ATGAATACTTTTTACCGTTATATATACCAACTCACTGCAACACCATTCGGTTGTTTTATGGTTCCAAATACCGCAGTTAGCAGCTTTTTGGCGAAGAATCAGGTTAAGAAGGTTTCTGATGTGGCAGCTGAGAACCTGTCCTCAGACACATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGATGTTTAGTGAGGAAACAAGTGAAGAGAAACAGATCGGACCCAACAATGTTCATAGTGACATACACCGGTGAACACAACCACCCTACTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACGCGCTACAAACCTCAGACTGGTGGAGACACAGCCACCACAAAAGCGGTTTCTCCGACGACCTCATCAGAGGTGGCACAACACAGTACAAAGTCAGAGTGCACAAAAGAGGAGTTGGAAGATATGATGAAAGATGATGAAAAAGCAAATGAGTTAGAGTTAACAGAACCAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCACTGATCCCTTTACAGCTAGTAGCAGCATTGATCGGTGGCCACTGTCCAATAATGCTACCACTACCGCTGGTGGTAGCTGA 654 0.4541 MNTFYRYIYQLTATPFGCFMVPNTAVSSFLAKNQVKKVSDVAAENLSSDTWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLVRKQVKRNRSDPTMFIVTYTGEHNHPTPTHKSSLAGSTRYKPQTGGDTATTKAVSPTTSSEVAQHSTKSECTKEELEDMMKDDEKANELELTEPVVSDDFFEGLEELTGSATDPFTASSSIDRWPLSNNATTTAGGS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02004 217 Coils Coil 153 173 - -
Viun10g02004 217 MobiDBLite consensus disorder prediction 99 146 - -
Viun10g02004 217 Pfam WRKY DNA -binding domain 49 106 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02004 217 ProSiteProfiles WRKY domain profile. 42 108 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02004 217 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 32 190 IPR044810 GO:0003700
Viun10g02004 217 SMART WRKY_cls 47 107 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02004 217 MobiDBLite consensus disorder prediction 99 155 - -
Viun10g02004 217 FunFam WRKY transcription factor 22 31 101 - -
Viun10g02004 217 MobiDBLite consensus disorder prediction 188 217 - -
Viun10g02004 217 MobiDBLite consensus disorder prediction 191 217 - -
Viun10g02004 217 Gene3D WRKY domain 31 109 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g02004 217 SUPERFAMILY WRKY DNA-binding domain 45 108 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02004 Viun-Chr10 34871873 34881350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02004 32 216 WRKY Transcription Factor Family AT4G01250 57.436 9.88e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun10g02004 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02004 K13425 - gmx:100815829 291.197