Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02001 ATGGAGCCATATCACTCAGCAGATAACATCCCCTTCGAGGAACATTTCGAAATCCATATACCAAATGATCAGGCTGAACAAGTACACGTCAAAAGTGGTCTGCTTCACAATGACTCCGGAGATGATATTCCACCCAAAGTACACATGTGTTTTGATAGCTTAGATGATGTAAAACAATTTTATAAAAATTACGGTATTAGAAGCGGCTTTGGTATTCGCACCAGGACTTCAGCAAGGGGCGAAGACAATGAAATCAACTACATCAAGTTGGTGTGTTCACGAGAGGGAAATTATGTGTCCGCTATTCCCCCGGAATTGAAGACCGTCCCAACTAAAGCAAAACAGTGTAAAGCTTCAATCACTGCAGCAAAGAAAGACGGACAATGGTTCATTAGGAGCGTTGTAACTGGTCACAGTCATGACATTAGTCCGAAGAAGTCAAGGCTAATACGGGGCAACCGTAAAGTTGACATGCATTCAAGGCAAACTGTTGAGACTAACGATGACGCTGGTGTCCGAATTAACAAAAGTTTCCGCTCTCTTGTCTCTGAAGCAGGTGGATATGAAAACGTTAACTTCATTGAACGTGATGTTCGCAACTACATTGGTCAACAAAGGCGATCATTGTGTAAGGATGGGGATGGGCAGACCCTTTTACGACATTTTTCAAAAATGCGGGAATTAAACAACGACTTCTTCTTTGAAATTGACATGGACGAAGACAACCGTATATGTAATGTTTTTTGGGCCGATGCGCGCAGTAGAGCGGCATCTGAGGATTTTGGTGATGTTGTGTCTTTTGACACCACATATCTGACCAACAAATATGACATGCCTTTCGCTCCTTTTGTAGGTGTTAATCACCATGGACACTCCATTTTATTAGGTTGTGGTCTAGTATCAGCTGAAGACACAAGGTCGTTCGTGTGGATTTTTGAATGCTGGCTTCGATGCATGTATAACAAACCACCCGAAGGAATTGTTACCGACCAATGTAAGGCAATGCTTAATGCAATTGGAGAAGTTTTCCCTACTACCAAACATCGATGGTGTCTATGGCACATAATGAAAAAAGTGCCGGAAAAATTGCAAGGTTACACTAAATACAAATCTATCAAGGCTGAATTGAAAAGACTAGTGTATGATTCAATCACGGTGGGTGAGTTTGAGTTGGGATGGGACGCATTTATTGGACAATATGATTTGTCCACAAACGACTGGCTCACTACATTGTTTGACGAGAGACATCGTTGGGTTCCTTGCTATCTTAAAAGTCAGTTTTGGGCTGGAATGTCAACCACCCAAAGGAGTGAAGGCCTCAACGCTTTTTTTGATGGGTTCATTAATTCGGGAACTACTTTGCAACAATTTGTTGTGCAATATGACAACGCACTACGACAAAAGGCAGAAAAAGAATTTGAAGCTGACTTTGCTTCATCCAATACCACTATTGCATGTGGATCACAATCTCTTATTGAGAGGCAATTTCAACTACAGTACACGCATGCCAAATTTGCGGAGCTCCAGAACGAATTTAGGGGAAAGATTAATTGTTTCGTCAAAAGGGTGTTCGAAGAACGGGAAAAAAATTTGTTCAACCCTTATACCTATTTCATTGGATAA 1623 0.414 MEPYHSADNIPFEEHFEIHIPNDQAEQVHVKSGLLHNDSGDDIPPKVHMCFDSLDDVKQFYKNYGIRSGFGIRTRTSARGEDNEINYIKLVCSREGNYVSAIPPELKTVPTKAKQCKASITAAKKDGQWFIRSVVTGHSHDISPKKSRLIRGNRKVDMHSRQTVETNDDAGVRINKSFRSLVSEAGGYENVNFIERDVRNYIGQQRRSLCKDGDGQTLLRHFSKMRELNNDFFFEIDMDEDNRICNVFWADARSRAASEDFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGLVSAEDTRSFVWIFECWLRCMYNKPPEGIVTDQCKAMLNAIGEVFPTTKHRWCLWHIMKKVPEKLQGYTKYKSIKAELKRLVYDSITVGEFELGWDAFIGQYDLSTNDWLTTLFDERHRWVPCYLKSQFWAGMSTTQRSEGLNAFFDGFINSGTTLQQFVVQYDNALRQKAEKEFEADFASSNTTIACGSQSLIERQFQLQYTHAKFAELQNEFRGKINCFVKRVFEEREKNLFNPYTYFIG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02001 540 Pfam MULE transposase domain 264 358 IPR018289 -
Viun10g02001 540 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 524 IPR031052 GO:0006355
Viun10g02001 540 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02001 Viun-Chr10 34843561 34845183 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun10g02001 MULE 2.2e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02001 - - vun:114165601 1125.92