Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01982 ATGGAACCAGATTGGGATCTCCACGCCGTCGTCAGAAGCTGCACCGCCACTTCCTCCGGCGCCACCACCGCATCCACCACCTCATCTTCTGGCTTTGGGGCTTCTGTCCCACCTTCTACTTCCCACAGCTTCTTCTCTGTTTACAACCCTGCTGTACAAGGAGGCCAAGTTGTGCCCCCTTCGGAGAACCCCTATGGAGTAAGACCTTCCATTGAAGAGCTTCACGAGCTTTGCAAGCCTTTCTTCACCAAACCACAGCCTCACACCTTCCAACCCTCTTCTCCTCTCTCTTCCTTTTCTTACTCATCAGTGCCCAAATCACCTCGCAGCCACCAAGAACAGAAGCAGCCACCCCAACCCGGTTCTGCCTCCACCCCAAAACCGAAAAGAAGGAAGAATCAGGTTAAGAAGGTTTGTGATGTGGCAGCTGAGAACCTCTCCTCGGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGATGTTTAGCGAGGAAACAAGTGGAGAGGAACAGATCGGACCCAACAATGTTCATAGTGACATACACTGGTGAACACAACCACCCTGCTCCGACTCATAAAAGCTCCCTTGCTGGCTCCACGCGCTACAAACCTCAGACCGGTGGAGACACAGCCGCCACAAAAGCGGTTTCTCCGGCGACCTCATCAGAGGTGGCACAGCACAGTACGAAGTCAGAGTGCACAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGAAGAAGCAAATGAGTTAGAGTTAACAGAAACAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCACTGATCCCTTTACAGCTAGTAGCAGCATTGATCGGTGGCCACTGTCCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA 954 0.5115 MEPDWDLHAVVRSCTATSSGATTASTTSSSGFGASVPPSTSHSFFSVYNPAVQGGQVVPPSENPYGVRPSIEELHELCKPFFTKPQPHTFQPSSPLSSFSYSSVPKSPRSHQEQKQPPQPGSASTPKPKRRKNQVKKVCDVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTGEHNHPAPTHKSSLAGSTRYKPQTGGDTAATKAVSPATSSEVAQHSTKSECTEEELEDLMKDDEEANELELTETVVSDDFFEGLEELTGSATDPFTASSSIDRWPLSNNATTAAGGS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01982 317 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 290 IPR044810 GO:0003700
Viun10g01982 317 MobiDBLite consensus disorder prediction 88 138 - -
Viun10g01982 317 Gene3D WRKY domain 131 201 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01982 317 Pfam WRKY DNA -binding domain 149 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01982 317 ProSiteProfiles WRKY domain profile. 142 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01982 317 MobiDBLite consensus disorder prediction 88 120 - -
Viun10g01982 317 Coils Coil 242 269 - -
Viun10g01982 317 MobiDBLite consensus disorder prediction 205 246 - -
Viun10g01982 317 MobiDBLite consensus disorder prediction 200 255 - -
Viun10g01982 317 SUPERFAMILY WRKY DNA-binding domain 144 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g01982 317 MobiDBLite consensus disorder prediction 16 38 - -
Viun10g01982 317 MobiDBLite consensus disorder prediction 288 317 - -
Viun10g01982 317 MobiDBLite consensus disorder prediction 291 317 - -
Viun10g01982 317 SMART WRKY_cls 147 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g01982 317 FunFam WRKY transcription factor 22 131 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01982 Viun-Chr10 34532272 34534076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01982 1 316 WRKY Transcription Factor Family AT4G01250 47.917 9.33e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun10g01982 WRKY 5.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01982 K13425 - gmx:100815829 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01982 10 34532272 34534076 Viun4g02032 4 36094580 36096592 ECH
Viun10g01982 10 34532272 34534076 Viun7g03187 7 34412245 34414573 ECH
Viun10g01982 10 34532272 34534076 Viun10g01982 10 34532272 34534076 ECH
Viun10g01982 10 34532272 34534076 Viun5g00823 5 5184180 5186153 ECH
Viun10g02618 10 39752376 39757458 Viun10g01982 10 34532272 34534076 ECH
Viun5g00823 5 5184180 5186153 Viun10g01982 10 34532272 34534076 PCT