Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01974 ATGGTGTCGGTGAACCCAAACCCCGCCCAAGGCTTTTACTTCTTCGATCCCTCCAATATGACCCTTCCCGGCGTGAATTCTCTTCCGCCGCCACCGCCGCCGACTCAGACTCCAGTCGCTGCCCCCGCCGTGGAGGATCCAAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCATGACAAATTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCAAAAACTGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTTCTAAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCCCGACCAAAGAGAAAAGCTACTCACCCATACCCTCAAAAGGCTCCTAAAATCACTCCTACTGTATCCCAAGTTATGGGCCCACTGCAACCTCCATCTGCTTTCATTGAACCTGCATATATTTATAGCTCGGATTCTTCATCTGTTCTTGGAACTCCAGTTACCAACATGCCTTTGTCGACTTGGAACTATAATGCTAAACCACCAGTCAATGTGCCACAAGTGACTAAAGATGACATGGGCTTGACCGGAGTGGCACAAACTATTCCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAACACCCCTCCAACTTGGCCAAGTAGCAAAAAGATGAATCAAGGTGGCCAGGGCAAGCCAATTAAAGTAATGCCAGATTTTGCTCAAGTCTACAGCTTCATTGGCAGTGTCTTTGATCCAAATTCGACTAATCACCTTCAGAAACTAAGACAGATGGACCCAATAAATGTAGAAACGGTATTGCTGTTGATGAGAAATCTCTCGGTCAATTTAATGAGTCCAGAGTTTGAGGACCATAAAAGGCTGCTTTCATCATATGATACCGACTCTGATGAATCGAAGCATGTTAATATTTGCAGCACTACTAAATCCGAGAGTGCTATTCTGTCTGCATAA 996 0.4478 MVSVNPNPAQGFYFFDPSNMTLPGVNSLPPPPPPTQTPVAAPAVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTVSQVMGPLQPPSAFIEPAYIYSSDSSSVLGTPVTNMPLSTWNYNAKPPVNVPQVTKDDMGLTGVAQTIPLNCCYSSSNENTPPTWPSSKKMNQGGQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLRQMDPINVETVLLLMRNLSVNLMSPEFEDHKRLLSSYDTDSDESKHVNICSTTKSESAILSA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01974 331 SMART sant 60 108 IPR001005 -
Viun10g01974 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Viun10g01974 331 Gene3D - 64 111 - -
Viun10g01974 331 MobiDBLite consensus disorder prediction 112 144 - -
Viun10g01974 331 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Viun10g01974 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Viun10g01974 331 CDD SANT 63 106 IPR001005 -
Viun10g01974 331 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Viun10g01974 331 MobiDBLite consensus disorder prediction 24 51 - -
Viun10g01974 331 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Viun10g01974 331 MobiDBLite consensus disorder prediction 24 40 - -
Viun10g01974 331 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Viun10g01974 331 PANTHER SWI/SNF COMPLEX-RELATED 33 292 - -
Viun10g01974 331 FunFam protein REVEILLE 6 isoform X1 63 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01974 Viun-Chr10 34374338 34380594 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun10g01974 Myb_DNA-binding 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01974 - - gmx:778090 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01974 10 34374338 34380594 Viun10g01974 10 34374338 34380594 ECH
Viun10g01974 10 34374338 34380594 Viun5g00835 5 5274715 5280982 ECH
Viun5g00835 5 5274715 5280982 Viun10g01974 10 34374338 34380594 PCT