Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01952 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTAGCTGGAAGGACAGGACCCCACTCTCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAATCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCGATTATCTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATCGCCATGCAAGGCAAAAGGAGGACTCTGCATAAAGAGGACTTGACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTTTCCGATTCTGACACCCGTTCACCTGGTGTCACCACCACTACCATGGAGGTAGAAACTTTGTACTAG 366 0.4699 MRQAGAYSGLLCGGVAGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIIAMQGKRRTLHKEDLTSAVIATDLFDFLITLVSDSDTRSPGVTTTTMEVETLY 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01952 121 Gene3D Histone, subunit A 16 101 IPR009072 GO:0046982
Viun10g01952 121 FunFam Nuclear transcription factor Y subunit C 15 102 - -
Viun10g01952 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Viun10g01952 121 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
Viun10g01952 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01952 Viun-Chr10 34240335 34240952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01952 22 106 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.000 9.35e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun10g01952 CBFD_NFYB_HMF 2.6e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01952 - - gmx:100777614 206.068