Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01944 ATGGGAATAAGGAGAATGAATTGCGAAGCATCCTCTTCATGGTCGAACCATGTTTTCTTGAGTTTCAGGGGTGAGGACACACGCAGAGGTTTCACAGACCATCTTTTCGCTTCACTGGAGAGAAGGGGGATTAAAACTTTCAAGGATGATCATGATCTCGAGAGGGGCAAAGTTATATCAGTGGAACTCATGAAAGCCATCGAAGATTCCATGTTTGCACTCATCATTCTCTCACCCAACTATGCCTCTTCAACATGGTGTTTGGATGAACTTCAGAAGATTGTGGATTGCAAGAAAGAAGCTTTTCCAATCTTCCATGGCGTAGACCCCTCTGATGTGAGGCATCAAAGAGGGAGCTTTGCCAAGGCCTTCGAAGAGCATGAAGAGAAATTCAGAGAAGACAAAGAGAAGGTGGAAAGATGGAGACATGCCTTGAGACAAGTTGCAAGTTACTCTGGATGGGACTCCAAGGATCAGAGTGAAGCAACACTGATTGAAACAATTGTCGGACACATAGAGAAAAAAATAATTCCTAGACTTCCATGTTTCACAGATAATCTTGTCGGAATTGATTCACGGATGAAAGAAGTGATTTCACTCATGGGCATAGGGTTAAATGATATTCGCTTCATAGGAATATGGGGCATGGGAGGCATAGGTAAAACAACACTGGCTAGATTAGTCTATGAAAAAATCAAAGAGAAATTCAAGGTTTGTTGCTTTCTTGAAAACATCAGAGAGTTGTCTAAGACAAATGGCTTAGTTCACATTCAAAAGGAAATTCTTTCCCATCTTAATGTAAGAAGCAATGATTTTTATAATCTTTATGATGGGAAAAAGATAATAGCAAACTCTTTAAGCAACAAAAAGGTACTTCTTGTTCTTGATGATGTAAGTGACATAAGCCAATTGGAGAATTTAACTGGAAAGCGAGAATGGTTTGGTCCAGGAAGCAGACTAATAATCACAACTAGAGATAAGCACCTGCTAAAGACATATGGAGTGGATGTAACCTATAAGGCCAGAGGCTTAGCCCAAAATGAAGCCCTTCAGCTCTTTTGTTTGAAAGCATTTAAACAAGATCAACCTAAAAAAGAGTATTTGAATTTGTGCAAAGGAGTGGTTGAATATGCAAGAGGCCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGAAGAACCTTTGAGGTTTGGCATAGTGCTTTAGAACAAATAAGAAGCTTTCCACACTCCAAAATCCAAGATACACTGAAAATAAGTTATGACAGTTTGGAACCTCTGGAGAAAAAAATGTTCCTAGATATTGCATGTTTCTTTGTAGGAATGGACATAGATGAAGTGATGAATATCTTGGAAAATTGTGGTGATCATCCCAGAATTGGAATTGACATTTTAACTGAAAGATCTTTGGTAACCCTTGATAGGGTGAGCAATAAGTTGGGGATGCATGATTTGCTACAAGAAATGGGTAGGAATATTGTATATCAAGAATCTCCAAATGACCCAGGGAAACGTAGTAGGTTGTGGTCTCAAAAGGATATTGATTATGTATTGACAAAAAACAAGGGAACTGATGAAATTCGAGGCATTGTTCTGAACTTAGTTCAACCGTATGATTGTGAAGCACGCTGGAACACAGAATCCTTCTCCAAGATAAGTCAGCTAAGGTTTCTCAAGTTATGTGATGTGCAGCTTCCTCGTGGCCTCAGCTGCCTCCCGAGTGCACTAAACGTTGTACATTGGAGAGGATGTCCTCTGAAAACCCTGCCACTTAGTAATCAACTTGATGAAGTTGTTGACCTCAAATTGCCTCACAGCAGAATAGAACAACTTTGGCATGGGACAAAGCTTCTAGACAAGCTAAAGTTCATCAATTTGAGCTTCTCAAAGAACCTGAAGCAATCCCCAGACTTTGTTGGGGTTCCAAATCTTGAATCATTGGTTCTTGAAGGTTGCACAAGTTTAACTGAGGTTCATCCATCCCTTGTACGCCACAAGAAACTTGTTAGTTTGAATTTAAAAGACTGTAAAAAGCTCAAAAGTCTTCCAAGTAAAATGGAGACGAGTTCCTTGAATGATTTAAATCTTTCTGGTTGTTCTCAATTTAAATGTCTTCCAGAGTTTGCTGAAAGCATGGAACATTTGTCAGTGCTTTCTTTAGAGGGGACTGCTATAACAAAGCTACCCACATCACTGGGATGTCTAACTGGCCTTTCTCATTTGGATATGAAGAATTGCAAGAATCTTGTTTGCATTCCAGATACCATTCATAAATTAAGATCTCTCATAGTTCTGAATGTTTCTGGCTGCTCAAAACTTAGTAGTTTGCCAGAGGGCTTAAAGGAAATCAAGTGCTTAGAGGAACTTAATGCAAGTGAAACTGCTATTCAAGAGCTACCTTCATTTGTATTTTATCTTGAAAACCTCAATGATATCTCATTTGCTGGGTGCAAAGGGCCTGTATCAAAATCGGCAAATGGATTTTTTCTCCCCTTTAAGTGGCTGTTTGGGAATCATCAAACTTCTATTGGATTTAGATTACCACCTTCAGCACTGAGTCTACCCTCTTTGAAGAGAATAAATTTAAGTTATTGCAATCTATCTGAAGAGTCATTCCCAGATGATTTTTATTGCTTATCTTCATTGGTGATTCTAGATCTCACTGGCAACAATTTTGTTAGCTTACCAAGTAGCATTTCCAAACTGGCAAGGCTTGAGCGTCTTATCTTAAACTACTGCAAAAAGCTTCAAAGGTTGCCAGAGCTTCCATCAAACATGCGAGGATTGGATGCAAGCAATTGCACTTCATTTGAGATTTCCAAATTCAATCCATCCAAACCATGTAGTCTTTTTGCATCACCTGCAAAATGGCATTTACCAAGACAGCTGAAAGGCGTTTTGGAGAAACTGCGTCTTCCCAGAGAAAGATTTGACATGCTTATCAGAGGGAGTGAAATTCCACCATGGTTTGCCCCTAATAAATGTGTTTCATTTGCAAAAATATCAGTCCCTCATAATTGCCCTATAAATGAATGGGTGGGATTTGCTTTGTGTTTCCTCTTAGTAAGTTATGTTGTCCCTCCTGATGTGTGCCATCATGAAGTTGATTGCTATTTCTTTGGACCTCATGGTAAGGTTTGTATCAGCTCCAGGTGTTTACCGCCCATGGAGCCATGCGATCCTCACCTTTATATTATCTATCTGTCCTTTGATGAATTGCGTGACATAATTTGTAAAGGCGGTGACTGCAGGGAAATTGAATTTGTACTGAAAACGTATTGTTGTCATTCACTTCAAATAGAGAGGTGTGGGAGTCGTTTGGTATGTAAACAAGATGTTGAAGATATTTATGGAAATGGTTTGTAG 3372 0.3932 MGIRRMNCEASSSWSNHVFLSFRGEDTRRGFTDHLFASLERRGIKTFKDDHDLERGKVISVELMKAIEDSMFALIILSPNYASSTWCLDELQKIVDCKKEAFPIFHGVDPSDVRHQRGSFAKAFEEHEEKFREDKEKVERWRHALRQVASYSGWDSKDQSEATLIETIVGHIEKKIIPRLPCFTDNLVGIDSRMKEVISLMGIGLNDIRFIGIWGMGGIGKTTLARLVYEKIKEKFKVCCFLENIRELSKTNGLVHIQKEILSHLNVRSNDFYNLYDGKKIIANSLSNKKVLLVLDDVSDISQLENLTGKREWFGPGSRLIITTRDKHLLKTYGVDVTYKARGLAQNEALQLFCLKAFKQDQPKKEYLNLCKGVVEYARGLPLALEVLGSHLYGRTFEVWHSALEQIRSFPHSKIQDTLKISYDSLEPLEKKMFLDIACFFVGMDIDEVMNILENCGDHPRIGIDILTERSLVTLDRVSNKLGMHDLLQEMGRNIVYQESPNDPGKRSRLWSQKDIDYVLTKNKGTDEIRGIVLNLVQPYDCEARWNTESFSKISQLRFLKLCDVQLPRGLSCLPSALNVVHWRGCPLKTLPLSNQLDEVVDLKLPHSRIEQLWHGTKLLDKLKFINLSFSKNLKQSPDFVGVPNLESLVLEGCTSLTEVHPSLVRHKKLVSLNLKDCKKLKSLPSKMETSSLNDLNLSGCSQFKCLPEFAESMEHLSVLSLEGTAITKLPTSLGCLTGLSHLDMKNCKNLVCIPDTIHKLRSLIVLNVSGCSKLSSLPEGLKEIKCLEELNASETAIQELPSFVFYLENLNDISFAGCKGPVSKSANGFFLPFKWLFGNHQTSIGFRLPPSALSLPSLKRINLSYCNLSEESFPDDFYCLSSLVILDLTGNNFVSLPSSISKLARLERLILNYCKKLQRLPELPSNMRGLDASNCTSFEISKFNPSKPCSLFASPAKWHLPRQLKGVLEKLRLPRERFDMLIRGSEIPPWFAPNKCVSFAKISVPHNCPINEWVGFALCFLLVSYVVPPDVCHHEVDCYFFGPHGKVCISSRCLPPMEPCDPHLYIIYLSFDELRDIICKGGDCREIEFVLKTYCCHSLQIERCGSRLVCKQDVEDIYGNGL 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01944 1123 FunFam Disease resistance protein (TIR-NBS-LRR class) 345 427 - -
Viun10g01944 1123 Pfam TIR domain 17 174 IPR000157 GO:0007165
Viun10g01944 1123 PRINTS Disease resistance protein signature 285 299 - -
Viun10g01944 1123 PRINTS Disease resistance protein signature 378 392 - -
Viun10g01944 1123 PRINTS Disease resistance protein signature 759 775 - -
Viun10g01944 1123 PRINTS Disease resistance protein signature 210 225 - -
Viun10g01944 1123 SMART LRR_typ_2 785 808 IPR003591 -
Viun10g01944 1123 SMART LRR_typ_2 714 737 IPR003591 -
Viun10g01944 1123 SMART LRR_typ_2 881 904 IPR003591 -
Viun10g01944 1123 SMART LRR_typ_2 856 880 IPR003591 -
Viun10g01944 1123 Gene3D Ribonuclease Inhibitor 708 947 IPR032675 -
Viun10g01944 1123 Coils Coil 124 144 - -
Viun10g01944 1123 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 709 IPR044974 GO:0006952
Viun10g01944 1123 SMART till_3 15 151 IPR000157 GO:0007165
Viun10g01944 1123 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 154 IPR035897 -
Viun10g01944 1123 Gene3D Ribonuclease Inhibitor 513 707 IPR032675 -
Viun10g01944 1123 Pfam NB-ARC domain 207 426 IPR002182 GO:0043531
Viun10g01944 1123 Gene3D - 343 431 IPR042197 -
Viun10g01944 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 437 IPR027417 -
Viun10g01944 1123 Gene3D - 9 175 IPR035897 -
Viun10g01944 1123 SUPERFAMILY L domain-like 484 933 - -
Viun10g01944 1123 Gene3D - 176 337 IPR027417 -
Viun10g01944 1123 ProSiteProfiles TIR domain profile. 14 176 IPR000157 GO:0007165
Viun10g01944 1123 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01944 Viun-Chr10 34141986 34146660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01944 11 829 WRKY Transcription Factor Family AT4G12020 32.542 1.41e-113 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01944 - - gmx:100815486 1825.06