Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01942 ATGGGGTTTCCTGCGTGTTGTGCACAGTTATACTTTCCAAAACCCTTCATTTCTCTCTCGGACATTCTCGGCCTCCTCCGAAACCTTGTATTCTTCTTCTTCAATCTCTTCGGCTTCTCCCACTTCCTCCGAAATCAGCACTCTGCAATTACGTCTGCCACCACTTCCACCGTCACCTCCGTCACCACCTCTGCTGCTGCGGTCACCACAACTCATGAAGTATCGGCGCATGTGATCAAGGAGCTCCTGCCTGTGGTCCTGTTCGGAGAGTCAGGAGAAAACGCGTGCATCTGCGTGTTCTGTCTGTCACAGTTCTCCGAGGAGGAGGAGATTCGGCGCATGCAGAACTGTAACCATGTTTTTCATCGCACCTGTGTGGACCGTTGGATCAATAGCAGTCAGAAAACGTGTCCTCTTTGTAGGACTCCCTTTGTAACCAATCACGATACTGAAAGTATGAGTTTGTATTTATTTCCAGGTTAG 483 0.4948 MGFPACCAQLYFPKPFISLSDILGLLRNLVFFFFNLFGFSHFLRNQHSAITSATTSTVTSVTTSAAAVTTTHEVSAHVIKELLPVVLFGESGENACICVFCLSQFSEEEEIRRMQNCNHVFHRTCVDRWINSSQKTCPLCRTPFVTNHDTESMSLYLFPG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01942 160 ProSiteProfiles Zinc finger RING-type profile. 98 141 IPR001841 -
Viun10g01942 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 38 147 - -
Viun10g01942 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 146 IPR013083 -
Viun10g01942 160 SMART ring_2 98 140 IPR001841 -
Viun10g01942 160 Pfam Ring finger domain 98 141 IPR001841 -
Viun10g01942 160 SUPERFAMILY RING/U-box 78 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01942 Viun-Chr10 34127871 34128477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01942 1 148 C3H Transcription Factor Family AT1G63840 37.748 1.47e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01942 K16281 - vun:114167546 273.863